View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14028_low_14 (Length: 446)
Name: NF14028_low_14
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_14 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 10309736 - 10309304
Alignment:
| Q |
16 |
atactataaatttgtcggcacaatatattaacccagggtatgcaaccgagaaaacatagttcataccgagtgctgtgcagctagcttactcaaaatattt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10309736 |
atactataaatttgtcggcacaatatattaacccagtgtatgcaaccgagaaaacatagttcataccgagtgctgtgcagctagcttactcaaaatattt |
10309637 |
T |
|
| Q |
116 |
ttcattgctaaaacactattgttagtatatcctttgtgatagttagtgttatttctatttactctgaaatctgcaagattccgatttccttgtgaatttc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10309636 |
ttcattgctaaaacactattgttagtatatcctgtgtgatagttagtgttatttctatttactctgaaatctgcaagattccgatttccttgtgaatttc |
10309537 |
T |
|
| Q |
216 |
acctaaatattatgatagttcaatcca--nnnnnnnnatttcctaattacgcctctatccagcctccttagtcttttgatatgtttgtgtatcgaacgat |
313 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10309536 |
acctaaatattatgatagttcaatccattttttttttatttcctaattatgcctctatccagcctcctttgtcttttgatatgtttgtgtatcgaacgat |
10309437 |
T |
|
| Q |
314 |
aaatgaagttcgtatgagaatgctatgattttcaatgtataggaatttgatgtggtgaaaagtgtgaatcccgcgttccataaagctactgaaagaatca |
413 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10309436 |
aaatgaagttcatatgagaatgctatgattttcaatatataggaatttgatgtggtgaaaagtgtgaatcccgcgttccataaagctactgaaagaatca |
10309337 |
T |
|
| Q |
414 |
atatttataagcaccacagacagacaattcagg |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
10309336 |
atatttataagcaccacagacagacaattcagg |
10309304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University