View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_15 (Length: 440)
Name: NF14028_low_15
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 9 - 422
Target Start/End: Complemental strand, 29295359 - 29294946
Alignment:
| Q |
9 |
gagatgaaagatgcgagcgaggagttaaggtctgcagctgttactgttattaaggagcttgatgaagcgaattcggatgggatggagagtgtggtaaaga |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295359 |
gagatggaagatgcgagcgaggagttaaggtctgcagctgttactgttattaaggagcttgatgaagcgaattcggatgggatggagagtgtggtaaaga |
29295260 |
T |
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| Q |
109 |
aattttctccggaggaagtgaagagagtattttctgttattatagctatgatgtcacatgttgtggatgatcctgtttggtatgatgttgatgataagaa |
208 |
Q |
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| T |
29295259 |
aattttctccggaggaagtgaagagagtattttctgttattatagatatgatgtcacatgttgtggatgatcctgtttggtatgatgttgatgataagaa |
29295160 |
T |
|
| Q |
209 |
ttgtaaagatgttcggatgatagaggattataaccggggaaagtttttgctgaatttactttcttttgatggagatgagcgtgtttttgttcccattgca |
308 |
Q |
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| T |
29295159 |
ttgtaaagatgttgggttgatagaggattataaccggggaaagtttttgctgaatttactttcttttgatggagatgagcgtgtttttgttcccattgca |
29295060 |
T |
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| Q |
309 |
attgagatgatagaaagtaaatatgcagttcattcagattggcgggtgcgttatgcagcaatgcttgccatagatgcaattgcagataaaaacttcaaag |
408 |
Q |
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| T |
29295059 |
attgagatgatagaaagtaaatatgcagttcattcagattggcgggtgcgttatgcagcaatgcttgccatagatgcaattgcagataaaaacttcaaag |
29294960 |
T |
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| Q |
409 |
gggtatgcgtatat |
422 |
Q |
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| T |
29294959 |
gggtatgcatatat |
29294946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 29321450 - 29321411
Alignment:
| Q |
174 |
gatgatcctgtttggtatgatgttgatgataagaattgta |
213 |
Q |
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| T |
29321450 |
gatgatcctctttggtatgatgttgatgataagaattgta |
29321411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 29332641 - 29332602
Alignment:
| Q |
174 |
gatgatcctgtttggtatgatgttgatgataagaattgta |
213 |
Q |
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||||||||| ||||||||||||| |||||||||||||||| |
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| T |
29332641 |
gatgatcctctttggtatgatgtggatgataagaattgta |
29332602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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