View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14028_low_16 (Length: 439)

Name: NF14028_low_16
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14028_low_16
NF14028_low_16
[»] chr2 (1 HSPs)
chr2 (20-429)||(2948148-2948575)
[»] chr1 (9 HSPs)
chr1 (20-429)||(24195582-24195985)
chr1 (222-429)||(20010069-20010276)
chr1 (222-429)||(24193276-24193486)
chr1 (20-159)||(20009859-20009998)
chr1 (20-159)||(24765979-24766118)
chr1 (108-159)||(24193147-24193198)
chr1 (236-274)||(51377261-51377299)
chr1 (187-220)||(24193223-24193256)
chr1 (32-98)||(51377092-51377155)
[»] chr3 (2 HSPs)
chr3 (18-425)||(3070163-3070568)
chr3 (256-429)||(9444911-9445084)
[»] chr8 (2 HSPs)
chr8 (20-159)||(43265652-43265791)
chr8 (20-111)||(10290136-10290226)
[»] chr7 (2 HSPs)
chr7 (32-159)||(4554283-4554410)
chr7 (20-77)||(37068173-37068230)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 429
Target Start/End: Complemental strand, 2948575 - 2948148
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccactt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  2948575 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcgtcaactactaccactt 2948476  T
Q  120 gctttcctcttcccttagaaactttttccccttgctttccttttccgttagaaacttctgccccttgctttcccttagattttgatgggggtggag---- 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||        
T  2948475 gctttcctcttcccttagaaactttttccccttgctttccttttccgttagaaacttttgccccttgctttcccttagattttgatgggggaggagctgc 2948376  T
Q  216 --------------ttgcaactgccttcaacaaagctgcttggctcctagtgttgaatatgggctcggcagcaccactcgcctcttcaacgtctagcaaa 301  Q
                  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2948375 atgagttgtagcagttgcaactgccttcagcaaagctgcttggctcctagtgttgaatatgggctcggcagcaccactcgcctcttcaacatctagcaaa 2948276  T
Q  302 cctatatcatcatcatcataaacaacctcactttgaccttcacgaacacaaacttcatctcccaataaccattcactaccagcattaatttcaggatcat 401  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  2948275 cctaaatcatcatcatcataaacaacctcactttgaccttcacgaacacgaacttcatcgcccaataaccattctctaccaacattaatttcaggatcat 2948176  T
Q  402 ccatgatcaccggatcaatatattcatc 429  Q
    ||||||||||||||||||||||||||||    
T  2948175 ccatgatcaccggatcaatatattcatc 2948148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 20 - 429
Target Start/End: Complemental strand, 24195985 - 24195582
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccactt 119  Q
    ||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||| ||||||||||||||||    
T  24195985 tcatcctctttctcttcattttcttcctcttcatcctctttttcttcatccccccaatcagtaacaaactcaggatcatattcgtcaactactaccactt 24195886  T
Q  120 gctttcctcttcccttagaaactttttccccttgctttccttttccgttagaaacttctgccccttg------ctttcccttagattttgatgggggtgg 213  Q
     ||||||| |||| ||| |||||||||||||||| |||||             ||||  ||||||||      |||||||||||||||||||||||| ||    
T  24195885 tctttccttttcctttataaactttttccccttgttttcc-------------actt--gccccttgatttccctttcccttagattttgatgggggcgg 24195801  T
Q  214 agttgcaactgccttcaacaa-agctgcttggctcctagtgttgaatatgggctcggcagcaccactcgcctcttcaacgtctagcaaacctatatcatc 312  Q
    || |||||  ||  | | ||  |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||  ||   | ||||||    
T  24195800 agctgcaagagctgt-agcagcagctgcttggctcctagtgttgaataagggctcggcagcaccacttgcctcttcaacatctagacaattcaaatcatc 24195702  T
Q  313 atcatcat---aaacaacctcactttgaccttcacgaacacaaacttcatctcccaataaccattcactaccagcattaatttcaggatcatccatgatc 409  Q
    ||||||||   ||||||| ||| ||||| | |||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |    
T  24195701 atcatcatcaaaaacaacatcaatttgatcgtcacgaacacgaacttcatctcccaataaccataaactaccagcattaatttcaggatcatccatgagc 24195602  T
Q  410 accggatcaatatattcatc 429  Q
    |||| |||||||||||||||    
T  24195601 accgaatcaatatattcatc 24195582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 222 - 429
Target Start/End: Original strand, 20010069 - 20010276
Alignment:
Q  222 ctgccttcaacaaagctgcttggctcctagtgttgaatatgggctcggcagcaccactcgcctcttcaacgtctagcaaacctatatcatcatcatcata 321  Q
    ||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||   | ||||||||||||| |    
T  20010069 ctgccttctgcaaagctgcttgactcctagtgttgaataagggctcggcagcaccacttgcctcttcaacatctagccaattcaaatcatcatcatcaaa 20010168  T
Q  322 aacaacctcactttgaccttcacgaacacaaacttcatctcccaataaccattcactaccagcattaatttcaggatcatccatgatcaccggatcaata 421  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| |||| ||||||||    
T  20010169 aacaacatcactttgaccgtcacgaacactaacttcatctcccaataaccataaactaccaacattaatttcaggatcatccatgagcaccagatcaata 20010268  T
Q  422 tattcatc 429  Q
    ||||||||    
T  20010269 tattcatc 20010276  T

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Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 222 - 429
Target Start/End: Original strand, 24193276 - 24193486
Alignment:
Q  222 ctgccttcaacaaagctgcttggctcctagtgttgaatatgggctcggcagcaccactcgcctcttcaacgtctagcaaacctatatcatcatcatcat- 320  Q
    ||||||||  |||||||||||||||||| |||||||||| ||||||| || ||||||| ||||||||||| |||||| ||   | ||||||||||||||     
T  24193276 ctgccttctgcaaagctgcttggctccttgtgttgaataagggctcgacaacaccacttgcctcttcaacatctagccaattcaaatcatcatcatcatc 24193375  T
Q  321 --aaacaacctcactttgaccttcacgaacacaaacttcatctcccaataaccattcactaccagcattaatttcaggatcatccatgatcaccggatca 418  Q
      ||||||| ||| ||||| | |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| ||||||||||    
T  24193376 aaaaacaacatcaatttgatcgtcacgaacacgaacttcatctcccaataaccataaactaccagcattaatttcaggataatccatgagcaccggatca 24193475  T
Q  419 atatattcatc 429  Q
    |||||||||||    
T  24193476 atatattcatc 24193486  T

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Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 20009859 - 20009998
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccactt 119  Q
    ||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||| ||  |||||||||| ||||||||||||||||    
T  20009859 tcatcctctttctcttcattttcttcctcttcatcctctttttcttcatccccccaatcagtaacaaactcaggatcatattcgtcaactactaccactt 20009958  T
Q  120 gctttcctcttcccttagaaactttttccccttgctttcc 159  Q
     ||||||| |||| ||||||||||||||||||||||||||    
T  20009959 tctttccttttcctttagaaactttttccccttgctttcc 20009998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 24766118 - 24765979
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccactt 119  Q
    ||||||||||| |||||| | ||| ||||||| ||||||||||||||||||||||||||| ||| ||| ||  |||||||||| ||||||| ||||||||    
T  24766118 tcatcctctttctcttcattttcttcctcttcttcctctttttcttcatccccccaatcagtaataaactcaggatcatattcgtcaactattaccactt 24766019  T
Q  120 gctttcctcttcccttagaaactttttccccttgctttcc 159  Q
     ||||||| |||| |||||||||| |||||||||||||||    
T  24766018 tctttccttttcctttagaaacttgttccccttgctttcc 24765979  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 24193147 - 24193198
Alignment:
Q  108 ctactaccacttgctttcctcttcccttagaaactttttccccttgctttcc 159  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  24193147 ctactaccactttctttccttttcctttagaaactttttccccttgctttcc 24193198  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 51377261 - 51377299
Alignment:
Q  236 gctgcttggctcctagtgttgaatatgggctcggcagca 274  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  51377261 gctgcttggctcctagtgttgattatgggctcagcagca 51377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 24193223 - 24193256
Alignment:
Q  187 ctttcccttagattttgatgggggtggagttgca 220  Q
    |||||||||||||||||||||||| |||||||||    
T  24193223 ctttcccttagattttgatgggggcggagttgca 24193256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 51377092 - 51377155
Alignment:
Q  32 tcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcat 98  Q
    |||||| | ||| ||| |||||||||||||||||||||| ||||   |||||| |||||||||||||    
T  51377092 tcttcattctcttccttttcatcctctttttcttcatcctccca---attaacgaattctagatcat 51377155  T

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Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 3070163 - 3070568
Alignment:
Q  18 catcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccac 117  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||| ||| |   | |||||||||| ||||||||| ||||    
T  3070163 catcatcctctttctcttcaatatcttcctcgtcatcctctttttcttcatcaccccaatcatttacataccttggatcatattcgtcaactactgccac 3070262  T
Q  118 ttgctttcctcttcccttagaaactttttccccttgcttt-ccttttccgttagaaacttctgccccttgctttcccttagattttgatgggggtggag- 215  Q
    || ||||||| |||||||| |||||||||||||||||||| || || ||  |      ||||  ||    |||||||||||||||||||||| |||  |     
T  3070263 tttctttccttttcccttaaaaactttttccccttgctttccccttgcccct------ttctttcc----ctttcccttagattttgatgggtgtgatgt 3070352  T
Q  216 --------ttgcaactgccttcaacaaagctgcttggctcctagtgttgaatatgggctcggcagcaccactcgcctcttcaacgtctagcaaacctata 307  Q
            ||||| ||||||||  | ||| ||||||||||||||||||||||| ||||||| || ||  |||| |||||||||| |||||| |||||| |    
T  3070353 tgtagctgttgcagctgccttctgcgaagttgcttggctcctagtgttgaataagggctcgacaacaatactcacctcttcaacatctagccaacctaaa 3070452  T
Q  308 tcatcatcatcataaacaacctcactttgaccttcacgaacacaaacttcatctcccaa----taaccattcactaccagcattaatttcaggatcatcc 403  Q
    ||||||||      |||||| ||||||||||| || |||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||    
T  3070453 tcatcatc------aacaacatcactttgaccatcgcgaacacaaacttcatctcccaataactaactattcactaccagcattaatttcaggatcatcc 3070546  T
Q  404 atgatcaccggatcaatatatt 425  Q
    |||| |||||||||||||||||    
T  3070547 atgagcaccggatcaatatatt 3070568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 256 - 429
Target Start/End: Original strand, 9444911 - 9445084
Alignment:
Q  256 gaatatgggctcggcagcaccactcgcctcttcaacgtctagcaaacctatatcatcatcatcataaacaacctcactttgaccttcacgaacacaaact 355  Q
    ||||||||||| |||| ||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| ||||||||||| |||| ||||| ||||    
T  9444911 gaatatgggcttggcaccaccactcgcctcttcaacatctaaccaacctaaatcatcatcatcataaacaacatcactttgaccatcacaaacacgaact 9445010  T
Q  356 tcatctcccaataaccattcactaccagcattaatttcaggatcatccatgatcaccggatcaatatattcatc 429  Q
    || ||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||||||||    
T  9445011 tcgtctcccaataaccattcaccaccaacattaatttcaggatcatccatgagcagcggatcaatatattcatc 9445084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 43265652 - 43265791
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccactt 119  Q
    ||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||| ||| ||| ||  |||||||||| ||||||||||||||||    
T  43265652 tcatcctctttctcttcattttcttcctcttcatcctctttttcttcatccccccaatcagtaataaactcaggatcatattcgtcaactactaccactt 43265751  T
Q  120 gctttcctcttcccttagaaactttttccccttgctttcc 159  Q
     ||||||| |||| |||||||||| |||||||||||||||    
T  43265752 tctttccttttcctttagaaacttgttccccttgctttcc 43265791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 10290226 - 10290136
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactac 111  Q
    ||||||||||| |||||| | ||| |||||||||||| |||||||||||| ||||||||| ||||||| ||  |||||||||| ||||||||    
T  10290226 tcatcctctttctcttcattttcttcctcttcatcctttttttcttcatc-ccccaatcagtaacaaactcaggatcatattcgtcaactac 10290136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 159
Target Start/End: Original strand, 4554283 - 4554410
Alignment:
Q  32 tcttcaatatctccctcttcatcctctttttcttcatccccccaatcattaacaaattctagatcatattcatcaactactaccacttgctttcctcttc 131  Q
    |||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||| ||   ||||||||| |||||||||||||||| ||||||| |||    
T  4554283 tcttcattttcttcctcttcatcctctttttcttcatccccccaatcagtaacaaactcagaatcatattcgtcaactactaccactttctttccttttc 4554382  T
Q  132 ccttagaaactttttccccttgctttcc 159  Q
    | ||||||||||||||||||||||||||    
T  4554383 ctttagaaactttttccccttgctttcc 4554410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 37068230 - 37068173
Alignment:
Q  20 tcatcctctttgtcttcaatatctccctcttcatcctctttttcttcatccccccaat 77  Q
    ||||||||||| |||||||  ||| |||||||||||||||||||||||||| ||||||    
T  37068230 tcatcctctttctcttcaaactcttcctcttcatcctctttttcttcatcctcccaat 37068173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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