View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_18 (Length: 382)
Name: NF14028_low_18
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 5832859 - 5833202
Alignment:
| Q |
23 |
gggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttcaactccac |
122 |
Q |
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||||| |||| |||||||| || ||| ||||||||| | |||||||||||||||| || ||||| || ||||| || ||| || | || ||||| |||| |
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| T |
5832859 |
gggcactttttgtaacaagctggtgagcaaagtttgccggtgaattgtggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccac |
5832958 |
T |
|
| Q |
123 |
atgctttcacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattaacaccttt |
222 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5832959 |
atgcttccacacattgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattgacaccttt |
5833058 |
T |
|
| Q |
223 |
ctgagtctccaataaacatctcttccctgatgaagctactgagaaactacacacttcctttggtaagtcctcacataccatttcagctgcaaaaatttat |
322 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5833059 |
ctgagtctccaacaaacatctcttccctgatgaagctactgagaaagtacacacttcctttggtaagtcctcacataccatttcagctgcaataatttat |
5833158 |
T |
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| Q |
323 |
gagtatttttaatatacatatcataagaaaaatattcaagaaaa |
366 |
Q |
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| T |
5833159 |
gagtagttttaatatacatatcataagaaaaatattcaagaaaa |
5833202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 36 - 343
Target Start/End: Complemental strand, 5828883 - 5828576
Alignment:
| Q |
36 |
aacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacaca |
135 |
Q |
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| T |
5828883 |
aacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttccacaca |
5828784 |
T |
|
| Q |
136 |
ttgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattaacacctttctgagtctccaat |
235 |
Q |
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|||||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||| | | |||| ||||||||| |
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| T |
5828783 |
ttgatctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaac |
5828684 |
T |
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| Q |
236 |
aaacatctcttccctgatgaagctactgagaaactacacacttcctttggtaagtcctcacataccatttcagctgcaaaaatttatgagtatttttaat |
335 |
Q |
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||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||| |||| ||| |||| || ||||||| |
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| T |
5828683 |
aaacatctctttcctgatgaagctactgagaaagcacacacttcctttggcaagtcctcacataccatcatagctacaaatattcatgaatagttttaat |
5828584 |
T |
|
| Q |
336 |
atacatat |
343 |
Q |
| |
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|| ||||| |
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|
| T |
5828583 |
atgcatat |
5828576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 36 - 303
Target Start/End: Original strand, 5822994 - 5823261
Alignment:
| Q |
36 |
aacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttcaactccacatgctttcacaca |
135 |
Q |
| |
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||||||||| |||||||| ||| |||||| | ||||||| || ||||| || ||||| || ||| || | || ||||| |||||||||| ||||| |
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| T |
5822994 |
aacaagatggagaacaaagcttgcttgtgaagtaaggctcaaagaaagcatcagatgaaataccaacagaacttctatcaacaccacatgcttctacaca |
5823093 |
T |
|
| Q |
136 |
ttgatctgtctctatgtactctgaaattctctccactataacttcagatgttctacattgatactcaatttcaccattaacacctttctgagtctccaat |
235 |
Q |
| |
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|| |||||||||||||| ||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||| | | |||| ||||||||| |
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| T |
5823094 |
ttcgtctgtctctatgtatgctgctattctctccaccataacttcagatgttcggcattgatactcggtttcaccattgatattcttctcagtctccaac |
5823193 |
T |
|
| Q |
236 |
aaacatctcttccctgatgaagctactgagaaactacacacttcctttggtaagtcctcacataccat |
303 |
Q |
| |
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||||||||||| || |||||||||||||||||| ||||||||||||||| ||||||||||| ||||| |
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| T |
5823194 |
aaacatctctttccagatgaagctactgagaaagcacacacttcctttggcaagtcctcacacaccat |
5823261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 24038472 - 24038609
Alignment:
| Q |
16 |
aatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24038472 |
aatattggggcaattttggtaacaagatgatgaacaaagtttggctgtgaattgtggctcaagcaatgcatcggaagaaattccgacaaaattcctttca |
24038571 |
T |
|
| Q |
116 |
actccacatgctttcacacattgatctgtctctatgta |
153 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24038572 |
actccacatgctttcacacattgatctgtctctatgta |
24038609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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