View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14028_low_2 (Length: 668)
Name: NF14028_low_2
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 392 - 658
Target Start/End: Complemental strand, 224786 - 224520
Alignment:
| Q |
392 |
tttttgcaataactttcagcaggtttttcttccatatccttacactagatcagtcaaagttcaatggagggtgtttgagaagctttttacagatttccgt |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224786 |
tttttgcaataactttcagcaggtttttcttccatatccttacactagatcagtcaaagttcaatggagggtgtttgagaagctttttacagatttccgt |
224687 |
T |
|
| Q |
492 |
gattgcttcaaccatgtagattattatgatatgttggcatgtgccaaaagtaggtttcagccaataccatctgcttggttaggttattagcaaactgaag |
591 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224686 |
gattgcttcaaccatgtagattattatgatatgttggcatgtgccaaaagtaggtttcagccaataccatctgcttggttaggttattagcaaactgaag |
224587 |
T |
|
| Q |
592 |
attttcaaagcatattaaatgtacaagacaaattatgttgaaaaatatagacctttatatatgatga |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224586 |
attttcaaagcatattaaatgtacaagacaaattatgttgaaaaatatagacctttatatatgatga |
224520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 151 - 397
Target Start/End: Complemental strand, 225066 - 224820
Alignment:
| Q |
151 |
gcagatcagtttattgcttgcggcaagtcaagagacgtagcccatgaacttgtatctcgaatctggctggctgttcttgacaatttggaagaaaatcagc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
225066 |
gcagatcagtttattgcttgcggcaagtcaagagacgtagcccatgaacttgtatctcgaatctggctggctgttcttgacaatttggaagaaaatcagc |
224967 |
T |
|
| Q |
251 |
ataccttttgcttacttaaacgccttgcacatgaaggggatgtaagtttagttagtattttgcttgcttcttaagacacttacaattttatacctatata |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
224966 |
ataccttttgcttacttaaacgccttgcacatgaaggggatgtaagtttagttagtattttgcttgcttcttaagacacttacaattttatacctatata |
224867 |
T |
|
| Q |
351 |
ttctttatcattatttcatagatttgtgcaaaaggatgagatttttg |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
224866 |
ttctttatcattatttcatagatttgtgcaaaaggatgagatctttg |
224820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 225214 - 225138
Alignment:
| Q |
1 |
atatcaaactgaattgatcctatgattctcattgaaatgaattagttctctctaagttggtttatcttgctcatgttgg |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
225214 |
atatcaaactgaattgatcctatgattctcattgaaatgaattagtt--ctctaagttggtttatcttgctcatgttgg |
225138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University