View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_21 (Length: 315)
Name: NF14028_low_21
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 14375647 - 14375350
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaaccttggccgagaatacccatcaatcagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
14375647 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaactttggccgagaatacccatcaatcagt |
14375548 |
T |
|
| Q |
101 |
ttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaatggttaaagtgccggaaattgtttccgcaaagtgttgaatgattggggctttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14375547 |
ttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaatggttaaagtgccggaaattgtttccgcaaagtgttgaatgattggggctttgc |
14375448 |
T |
|
| Q |
201 |
atactccacctaaacgtgacagttcacgggctgatggtaaataatatcgctgcagataataagtttcaaagttgttaagcatcaccatataatattat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14375447 |
atactccacctaaacgtgacagttcacgggctgatggtaaataatatcgctgcagataataagtttcaaagttgttaagcatcaccatataatattat |
14375350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41449575 - 41449831
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaaccttggccgagaatacccatcaatcagt |
100 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
41449575 |
aaaggcaaacgtgatggaagacaacatatctaagcggaagcataaccattccatagcagcagcaatattgaactttggccgagaatacccatcagtcagt |
41449674 |
T |
|
| Q |
101 |
ttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaatggttaaagtgccggaaattgtttccgcaaagtgttgaatgattggggctttgc |
200 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41449675 |
ttcatgtttgtttcatgaaatctagactgttgatcaaagcttctaatggttgaagtaccggaaattgtttctgcaaagtgttgaatgattggggctttgc |
41449774 |
T |
|
| Q |
201 |
atactccacctaaacgtgacagttcacgggctgatggtaaataatatcgctgcagat |
257 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41449775 |
atactccacctaaacgtgatagttcacgggctgatggtaaataatatcgctgcagat |
41449831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 41436362 - 41436618
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaaccttggccgagaatacccatcaatcagt |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||| ||||| |
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| T |
41436362 |
aaaggcaaatgtgatggaagacaacatatctaagcggaagcataaccattccatagcagcaacaatattgaactttggccgagaatacccatcagtcagt |
41436461 |
T |
|
| Q |
101 |
ttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaatggttaaagtgccggaaattgtttccgcaaagtgttgaatgattggggctttgc |
200 |
Q |
| |
|
||||| |||||||||| |||||| ||||||| ||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41436462 |
ttcatgtttgtttcataaaatctagactgttgatcaaagcttctaatggttgaagtaccggaaattgtttctgcaaagtgttgaatgattggggctttgc |
41436561 |
T |
|
| Q |
201 |
atactccacctaaacgtgacagttcacgggctgatggtaaataatatcgctgcagat |
257 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
41436562 |
atactccacctaaacgtgatagttcacgggctgatggtaaataatatcgctgcagat |
41436618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 14238491 - 14238747
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaaccttggccgagaatacccatcaatcagt |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| || ||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||| |
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| T |
14238491 |
aaaggcaaatatgatggaagacaacatatctaagcgtaaagataaccattccatagcagcagaaatgttgaaatttggccgagaatacccatcagtcagt |
14238590 |
T |
|
| Q |
101 |
ttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaatggttaaagtgccggaaattgtttccgcaaagtgttgaatgattggggctttgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||| | |
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| T |
14238591 |
ttcatatttgtttcatgaaatcttgactgttgatcaaagcttctaatggtcgaagtaccggaaattgtttccacaaagtgttgaatgattggggcttcac |
14238690 |
T |
|
| Q |
201 |
atactccacctaaacgtgacagttcacgggctgatggtaaataatatcgctgcagat |
257 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14238691 |
atactccacccaaacgcgacagttcacgggctgatggtgaataatatcgctgcagat |
14238747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 10593483 - 10593333
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacata----accattccatagcagcagcaatgttgaaccttggccgagaatacccatcaat |
96 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||| |||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||| ||| |
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| T |
10593483 |
aaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccattccgtagcagcagcaatgttcaactttggccgagaatacccattaat |
10593384 |
T |
|
| Q |
97 |
cagtttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaat |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
10593383 |
cagtttcatatttgtttcatgaaatcttgacagttgatcaaagcttctaat |
10593333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 22747784 - 22748030
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaaccttggccgagaatacccatcaatcagt |
100 |
Q |
| |
|
|||||||||||| || |||||||||||||||| || ||| | |||||||||||||| | ||||| |||||| | || || ||||| ||||| |||| |
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|
| T |
22747784 |
aaaggcaaatgtaatggaagacaacatatctaagcgaaaagacaaccattccatagccccggcaatattgaacttggggcgtgaatatccatccatcaaa |
22747883 |
T |
|
| Q |
101 |
ttcatatttgtttcatgaaatcttgactgtttatcaaagcttctaatggttaaagtgccggaaattgtttccgcaaagtgttgaatgattggggctttgc |
200 |
Q |
| |
|
||||||||||||| || ||||||||| | ||||||||| || |||||| | || || ||||||||||| |||||||||||||||| || |||||| |
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|
| T |
22747884 |
ttcatatttgtttgctggaatcttgacacctgatcaaagctcctgatggttgatgtacctgaaattgtttcggcaaagtgttgaatgacaggagctttgg |
22747983 |
T |
|
| Q |
201 |
atactccacctaaacgtgacagttcacgggctgatggtaaataatat |
247 |
Q |
| |
|
||||||| ||||||| || ||||||||| ||||||||| ||||||| |
|
|
| T |
22747984 |
atactccgactaaacgagatagttcacggcctgatggtatataatat |
22748030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 32119143 - 32119255
Alignment:
| Q |
1 |
aaaggcaaatgtgatcaaagacaacatatctaaacggaaacataaccattccatagcagcagcaatgttgaaccttggccgagaatacccatcaatcagt |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||| |
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| T |
32119143 |
aaagacaaatctgatcaaagacaacatatctatacggagacataaccattccatagcagcagcaatgttgaactttggcaaagaatatccattaatcagg |
32119242 |
T |
|
| Q |
101 |
ttcatatttgttt |
113 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
32119243 |
ttcatatatgttt |
32119255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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