View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_23 (Length: 298)
Name: NF14028_low_23
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 35269560 - 35269273
Alignment:
| Q |
1 |
aactgcataattgttcatatctgttggttagtccacattccaatttcatttgaatcaagaaaatagtgtaaacgaatgaaattgaaactgtagcatagtc |
100 |
Q |
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| T |
35269560 |
aactgcataactgttcatatctgttggttagtccacattccaatttcatttgaatcaagaaaataatgtaaacgaatgaaattgaaactgtagcatagtc |
35269461 |
T |
|
| Q |
101 |
gtaaaactgaattgaaatgattctctaaataaaatgattaagtcaaatttaaaatagcgtaaacgaatgaaaatttaacaatgttcttagtgttatgcag |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35269460 |
gtaaaactgaattgaaacgattctctaaataaaatgattaagtcaaatttaaaatagcgtaaacgaatgaacatttaacaatgttcttagtgttatgcag |
35269361 |
T |
|
| Q |
201 |
tacagttttagatgttcatggagagtatacgagaaaatcgtagttcgacgcgtggtatacaagggatgaatgattcctggtgcctttg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
35269360 |
tacagttttagatgttcatggagagtatacgagaaaatcgtagttcaacgcgtggtatacaagggatgaatgattcccggtgcctttg |
35269273 |
T |
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