View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_29 (Length: 224)
Name: NF14028_low_29
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 13119586 - 13119779
Alignment:
| Q |
16 |
aatatgacgcatacgcctctttgaatcgataggattcaaagcagcagcatgaacttggacaagtagttggttttccagaggggatggaataggaaagtcc |
115 |
Q |
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| T |
13119586 |
aataggacgcatacgcctctttgaatcaataggattcaaagcagcagcatgaacttggacaagtagttggttttccagaggggatggaataggaaagtcc |
13119685 |
T |
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| Q |
116 |
cctagcttaaggacttccttaggaccatactcctcatagaaccaagctttctgcattttcatgtttaaactttaaaaatattctctgaaatgtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
13119686 |
cctagcttaaggacttccttaggaccatactcctcatagaaccaagctttctgcattttcatgtttaaactttaaaaaaattctctgaaatgtg |
13119779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 13007864 - 13007703
Alignment:
| Q |
16 |
aatatgacgcatacgcctctttgaatcgataggattcaaagcagcagcatgaacttggacaagtagttggttttccagaggggatggaataggaaagtcc |
115 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13007864 |
aataggacgcatacgcctctttgaatcgataggattcaaagcagcagcataaacttggacaagtagttggttttccagaggggatggaataggaaagtcc |
13007765 |
T |
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| Q |
116 |
cctagcttaaggacttccttaggaccatactcctcatagaaccaagctttctgcattttcat |
177 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13007764 |
cctagcttaaggacttccttaggaccatactcctcatagaaccaagctttctgcattttcat |
13007703 |
T |
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