View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14028_low_3 (Length: 646)

Name: NF14028_low_3
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14028_low_3
NF14028_low_3
[»] chr8 (4 HSPs)
chr8 (165-621)||(7961438-7961894)
chr8 (12-283)||(7971332-7971603)
chr8 (330-621)||(7971969-7972264)
chr8 (12-50)||(7961397-7961435)
[»] chr4 (6 HSPs)
chr4 (421-605)||(47293429-47293613)
chr4 (422-621)||(56208520-56208719)
chr4 (416-603)||(55705856-55706043)
chr4 (445-578)||(45876748-45876881)
chr4 (445-578)||(45858817-45858950)
chr4 (443-589)||(54304207-54304359)
[»] chr5 (3 HSPs)
chr5 (432-578)||(35854542-35854688)
chr5 (432-576)||(10521303-10521447)
chr5 (502-578)||(35802504-35802580)
[»] chr2 (1 HSPs)
chr2 (432-576)||(24357457-24357601)


Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 165 - 621
Target Start/End: Original strand, 7961438 - 7961894
Alignment:
Q  165 agagtattaataaactgtttataagatgcagagaagggagaaaccaaatgcaatagtaataaactgtgcttaagacaatgaatagtgcaagataaaaact 264  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  7961438 agagaattaataacctgtttataaaatgcagagaagggagaaaccaaatgcaatagtattaacctgtgcttaagacgatgaatagtgcaagataaaaact 7961537  T
Q  265 aaggaattggttataataaactttcatacttcatagtagtaatggcataaatcttaaataataactaataatattaatatgattttttcctcgtagttat 364  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7961538 aaggaattggttataataaactttcatacatcatagtagtaatggaataaatcttaaataataactaataatattaatatgatttttccctcgtagttat 7961637  T
Q  365 tatattcaacgaaagaatagtcaataacccttaaaaccacaggaagagtaagagaactccacaatagtaacatgtttgttttgaggaatattggccttca 464  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7961638 tatattcaacgaaataatagtcaataacccttaaaaccacaggaagagtaagagaactccacaatagtaacatgtttgttttgaggaatattggccttca 7961737  T
Q  465 attttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatctttaccggtccaaattctcccttgtgcaacctc 564  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7961738 attttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaatcattagatattgcatctttaccagtccaaattctcccttgtgcaacctc 7961837  T
Q  565 ttccatcttgtctatagttattgatcttgaaagagccgcatcatctcgaaattgttt 621  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  7961838 ttccatcttgtctatagtcattaatcttgaaagagccgcatcatctcgaaattgttt 7961894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 12 - 283
Target Start/End: Original strand, 7971332 - 7971603
Alignment:
Q  12 atatgtaactaccgtgtcaattgtatttcaaaatcaaatcattaaattgcatcactggacaacacactcttctcaagattgagttgcctgaaagagaaga 111  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| |||||||||||    
T  7971332 atatgtaactactgtgtcaattgtatttcaaaatcaaatcattaaattgcttcacaagacaacacactcttctcaagattgagttgcccgaaagagaaga 7971431  T
Q  112 aacaaataaaacccagaaagagatttttaccctatcttccttctgtagcgttgagagtattaataaactgtttataagatgcagagaagggagaaaccaa 211  Q
    |||||| ||||||||||||||||||||| || ||||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||| |||    
T  7971432 aacaaaaaaaacccagaaagagatttttgccatatcttccttctgtagctttgaaagtattaataacctgtttataaaatgcagagaagggagaaaacaa 7971531  T
Q  212 atgcaatagtaataaactgtgcttaagacaatgaatagtgcaa-gataaaaactaaggaattggttataataa 283  Q
    |||||| |||||||| ||||||||||||  ||||||||||||| || ||||||||||| |||||| |||||||    
T  7971532 atgcaaaagtaataacctgtgcttaagatgatgaatagtgcaaggaaaaaaactaagg-attggtcataataa 7971603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 330 - 621
Target Start/End: Original strand, 7971969 - 7972264
Alignment:
Q  330 taataatattaatatgattttttcctcgtagttattatattcaacgaaagaatagtcaat-----aacccttaaaaccacaggaagagtaagagaactcc 424  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| | ||||||||||||     ||||||| ||||||||||||||||| |||| ||||    
T  7971969 taataatattattatgattttttcctc-tagttattatattcaacaagagaatagtcaatacaataacccttcaaaccacaggaagagtatgagagctcc 7972067  T
Q  425 acaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagata 524  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||  |||||||||||||||||||||||||    
T  7972068 acaatagtaacatgtctgttttgaggaagattggccttcaattttgctatagcaatagcacgcgatagtccactgatagcatcgaccaaaccattagata 7972167  T
Q  525 ttgcatctttaccggtccaaattctcccttgtgcaacctcttccatcttgtctatagttattgatcttgaaagagccgcatcatctcgaaattgttt 621  Q
     ||||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||| |||||||| |||||| || |||||||||||||||||||    
T  7972168 ctgcatctttaccggtccaaatcctcctctgtgcaacctcttccatcttgtctacagtcattgatctggaaagatccacatcatctcgaaattgttt 7972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 7961397 - 7961435
Alignment:
Q  12 atatgtaactaccgtgtcaattgtatttcaaaatcaaat 50  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7961397 atatgtaactaccgtgtcaattgtatttcaaaatcaaat 7961435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 2e-54; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 421 - 605
Target Start/End: Complemental strand, 47293613 - 47293429
Alignment:
Q  421 ctccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccatta 520  Q
    |||||||| ||| || ||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| |    
T  47293613 ctccacaagagtgacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcgcgcgatagtccaccaatagcatcaaccaaaccatga 47293514  T
Q  521 gatattgcatctttaccggtccaaattctcccttgtgcaacctcttccatcttgtctatagttattgatcttgaaagagccgcat 605  Q
    |||| ||| || |||| ||||||||| || || |||||||||||||||||||||||||| || |||||||| |||||||||||||    
T  47293513 gatactgcgtccttactggtccaaatccttccctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagccgcat 47293429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 422 - 621
Target Start/End: Original strand, 56208520 - 56208719
Alignment:
Q  422 tccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattag 521  Q
    ||||||| |||||||||||||| |||||| |||   ||||||||||||||||||||||||||  | ||||  |||||||||||||| |||||||||  ||    
T  56208520 tccacaacagtaacatgtttgtcttgaggtataccagccttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccaagag 56208619  T
Q  522 atattgcatctttaccggtccaaattctcccttgtgcaacctcttccatcttgtctatagttattgatcttgaaagagccgcatcatctcgaaattgttt 621  Q
    ||| |||||||||||||||| |||  ||||| |||||||||||||||||||  |||||||| |||||||| ||||||||||||| |||||||||||||||    
T  56208620 atagtgcatctttaccggtctaaaccctcccctgtgcaacctcttccatctcatctatagtcattgatctggaaagagccgcattatctcgaaattgttt 56208719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 416 - 603
Target Start/End: Complemental strand, 55706043 - 55705856
Alignment:
Q  416 gagaactccacaatagtaacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaac 515  Q
    |||| |||||||| | |||| | | |||||||||| ||||| || ||||||||||  |||||||||||  ||||||| |||||||||||||| |||||||    
T  55706043 gagagctccacaacaataacctctctgttttgaggtatattagctttcaattttgtaatagcaatagcacgcgatatcccaccaatagcatcaaccaaac 55705944  T
Q  516 cattagatattgcatctttaccggtccaaattctcccttgtgcaacctcttccatcttgtctatagttattgatcttgaaagagccgc 603  Q
    ||| ||||  ||| ||||||||||||||||  ||||| || |||||||||||||||||||||||||| || ||||| |||||||||||    
T  55705943 catgagatgctgcgtctttaccggtccaaaccctcccatgcgcaacctcttccatcttgtctatagtcatagatctggaaagagccgc 55705856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 445 - 578
Target Start/End: Original strand, 45876748 - 45876881
Alignment:
Q  445 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatctttaccggtccaa 544  Q
    |||||| ||||| || |||||||||||||||||||||||  | ||||  |||||||||||||| ||||||||||  |||  |||||| ||||||||||||    
T  45876748 ttgaggtatattagctttcaattttgctatagcaatagcacgagatagcccaccaatagcatcaaccaaaccatgggatgctgcatccttaccggtccaa 45876847  T
Q  545 attctcccttgtgcaacctcttccatcttgtcta 578  Q
    |  |||||||||||||||||||||||||||||||    
T  45876848 accctcccttgtgcaacctcttccatcttgtcta 45876881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 445 - 578
Target Start/End: Original strand, 45858817 - 45858950
Alignment:
Q  445 ttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatctttaccggtccaa 544  Q
    |||||| ||||||||||||||||| ||||||||||||||  | ||||  |||||||||||||| |||| ||||| ||||| |||||| ||||||||||||    
T  45858817 ttgaggtatattggccttcaatttggctatagcaatagcacgtgatagcccaccaatagcatcaaccagaccatgagatactgcatccttaccggtccaa 45858916  T
Q  545 attctcccttgtgcaacctcttccatcttgtcta 578  Q
    |  ||| | |||||| ||||||||||||||||||    
T  45858917 accctctcctgtgcagcctcttccatcttgtcta 45858950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 443 - 589
Target Start/End: Complemental strand, 54304359 - 54304207
Alignment:
Q  443 ttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatctttaccggtcc 542  Q
    |||||||| ||||||||||||||||||||||||||||||||  | || || || ||||||||||| ||||||||   |||| |||| || ||||| ||||    
T  54304359 ttttgaggtatattggccttcaattttgctatagcaatagcacgagacatcccgccaatagcatcaaccaaaccgagagatgttgcgtccttaccagtcc 54304260  T
Q  543 aaa--tt----ctcccttgtgcaacctcttccatcttgtctatagttattgat 589  Q
    |||  ||    ||||| |||| |||||||||||| |||||||| || ||||||    
T  54304259 aaaccttccccctcccctgtggaacctcttccattttgtctattgtcattgat 54304207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 5e-39; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 432 - 578
Target Start/End: Complemental strand, 35854688 - 35854542
Alignment:
Q  432 taacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatc 531  Q
    |||| ||| |||||||||| ||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |||||||||| ||||  ||| ||    
T  35854688 taacctgtctgttttgaggtatattggccttcaattttgctatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccatgagatgctgcgtc 35854589  T
Q  532 tttaccggtccaaattctcccttgtgcaacctcttccatcttgtcta 578  Q
     |||||||||||||| ||||| |||||||||| || |||||||||||    
T  35854588 cttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35854542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 432 - 576
Target Start/End: Complemental strand, 10521447 - 10521303
Alignment:
Q  432 taacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatc 531  Q
    |||| |||||||||||||| ||||||||||| |||||||| |||||||||||  ||||||| |||||||||||||| |||||||| | ||||  ||| ||    
T  10521447 taacctgtttgttttgaggtatattggccttgaattttgcgatagcaatagcacgcgatatcccaccaatagcatcaaccaaaccttgagatgctgcgtc 10521348  T
Q  532 tttaccggtccaaattctcccttgtgcaacctcttccatcttgtc 576  Q
     || ||| ||||||| ||||  |||| || ||||| |||||||||    
T  10521347 cttcccgatccaaatcctcctatgtggaatctctttcatcttgtc 10521303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 502 - 578
Target Start/End: Original strand, 35802504 - 35802580
Alignment:
Q  502 agcatcgaccaaaccattagatattgcatctttaccggtccaaattctcccttgtgcaacctcttccatcttgtcta 578  Q
    |||||| |||||||||| ||||  ||| || |||||||||||||| ||||| |||||||||| || |||||||||||    
T  35802504 agcatcaaccaaaccatgagatgctgcgtccttaccggtccaaatcctcccatgtgcaacctttttcatcttgtcta 35802580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 432 - 576
Target Start/End: Complemental strand, 24357601 - 24357457
Alignment:
Q  432 taacatgtttgttttgaggaatattggccttcaattttgctatagcaatagcgtgcgatattccaccaatagcatcgaccaaaccattagatattgcatc 531  Q
    |||| |||| || |||||| ||||||||||||||||||||||| ||||||||  | || |  |||||||||||||| ||||||||||  |||  ||||||    
T  24357601 taacctgttcgtcttgaggtatattggccttcaattttgctatggcaatagctcgggaaaggccaccaatagcatcaaccaaaccatgtgatgctgcatc 24357502  T
Q  532 tttaccggtccaaattctcccttgtgcaacctcttccatcttgtc 576  Q
    |||||| ||||||| |||||| ||||| ||||  |||||||||||    
T  24357501 tttaccagtccaaactctcccctgtgctaccttctccatcttgtc 24357457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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