View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_30 (Length: 215)
Name: NF14028_low_30
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 47 - 201
Target Start/End: Original strand, 22533926 - 22534080
Alignment:
| Q |
47 |
caagaaacccacgcttgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctcatttactggaaaaccgttccatcac |
146 |
Q |
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| T |
22533926 |
caagaaacccacaattgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctcatttactggaaaaccgttccatcac |
22534025 |
T |
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| Q |
147 |
ccttcctaaggatccttactaccagttgtgggacaacgtagttcccaatattctt |
201 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22534026 |
ccttcctaaggatccttaccaccagttgtgggacaacgtagttcccaatattctt |
22534080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 22525940 - 22525786
Alignment:
| Q |
47 |
caagaaacccacgcttgtcaacggaattctggatagatgattgtgattacagttttgtacacttccctcttgctcatttactggaaaaccgttccatcac |
146 |
Q |
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|||||||||||| ||||||| |||||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22525940 |
caagaaacccacacttgtcatcggaattccttatagatgatctcgattccaattttgtacacttccctcttgctcatttactggaaaacctttccatcac |
22525841 |
T |
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| Q |
147 |
ccttcctaaggatccttactaccagttgtgggacaacgtagttcccaatattctt |
201 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
22525840 |
ccttcctaaggatccttactaccggttgtgggacaaggtagttcccattattctt |
22525786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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