View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_4 (Length: 634)
Name: NF14028_low_4
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 11 - 616
Target Start/End: Complemental strand, 10562226 - 10561621
Alignment:
| Q |
11 |
cacagatgaaggagttaatacgagagaaacaaatgaacagacaggaaatggagaaattaatgaagcaaatgacaattgaaaaatttgttaggaagaataa |
110 |
Q |
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| T |
10562226 |
cacagatgaaggagttaatacgagagaaacaaatgaacagacaggaaatggagaaattaatgaagcaaatgacaattgaaaaatttgttaggaagaataa |
10562127 |
T |
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| Q |
111 |
agaacatgatagaattcaaactgaggtacaatcacttaaagaagagctagaagatgagagaaggctacgaaagcactctgaaagcttgcaacagaggctt |
210 |
Q |
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| T |
10562126 |
agaacatgatagaattcaaactgaggtacaatcacttaaagaagagctagaagatgagagaaggctacgaaagcactctgaaagcttgcaacagaggctt |
10562027 |
T |
|
| Q |
211 |
gcttgtgagctttctgaagtaaaatcttcattctctagttgtttgagaaaccttgaacaagagagaaaagcacgaatacttttggagaatttgtgcgacg |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10562026 |
gcttgtgagctttctgaagtaaaatcttcattctctagttgtttgagaaaccttgaacaagagagaaaagcacaaatacttttggagaatttgtgcgacg |
10561927 |
T |
|
| Q |
311 |
agtttgccaaaggaataaaaaattatgaacaaaaagttcattgtcttaggcagaattctgagaatggttaccttgaagggaagaatgttgatcggctaat |
410 |
Q |
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| T |
10561926 |
agtttgccaaaggaataaaaaattatgaacaaaaagttcattgtcttaggcagaattctgagaatggttaccttgaaggggagaatgttgatcggctaat |
10561827 |
T |
|
| Q |
411 |
ccttcatatttcagaaggttggcttgatgagcgcacacaaatgaagagagcacaatctgacagtgatctcatagatagaatctcaattgttgacaagtta |
510 |
Q |
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| T |
10561826 |
ccttcatatttcagaaggttggcttgatgagcgcacacaaatgaagagagcacaatctgacagtgatatcatagatagaatctcaattgttgacaagtta |
10561727 |
T |
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| Q |
511 |
ggttttgatatagaaacatttcttcatgcaaaacgttccattgactttaaaaaatacggttactcctcgccgaaggagctcaaggaaatttatccttgtc |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10561726 |
ggttttgatatagaaacatttcttcatgcaaaacgttccattgattttaaaaaatacggttactcctcgccgaaggagctcaaggaaatttatccttgtc |
10561627 |
T |
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| Q |
611 |
aacatt |
616 |
Q |
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|||||| |
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| T |
10561626 |
aacatt |
10561621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 545
Target Start/End: Original strand, 48234311 - 48234363
Alignment:
| Q |
493 |
tcaattgttgacaagttaggttttgatatagaaacatttcttcatgcaaaacg |
545 |
Q |
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| T |
48234311 |
tcaatagttgacaagttacgcattgatattgaaacatttcttcatgcaaaacg |
48234363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 48231878 - 48231930
Alignment:
| Q |
289 |
cttttggagaatttgtgcgacgagtttgccaaaggaataaaaaattatgaaca |
341 |
Q |
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| T |
48231878 |
cttttggagaatttgtgtgatgattttgccaaaggagtaagagattatgaaca |
48231930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 493 - 557
Target Start/End: Original strand, 48232091 - 48232155
Alignment:
| Q |
493 |
tcaattgttgacaagttaggttttgatatagaaacatttcttcatgcaaaacgttccattgactt |
557 |
Q |
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||||| |||||||||||| | ||||||| ||||||||||||||| ||||| | || |||||||| |
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| T |
48232091 |
tcaatagttgacaagttacatgttgatattgaaacatttcttcatacaaaaagatctattgactt |
48232155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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