View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14028_low_5 (Length: 590)

Name: NF14028_low_5
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14028_low_5
NF14028_low_5
[»] chr1 (7 HSPs)
chr1 (5-200)||(19228381-19228576)
chr1 (415-557)||(19228579-19228721)
chr1 (5-62)||(34548911-34548968)
chr1 (1-61)||(46731622-46731682)
chr1 (1-63)||(4532566-4532628)
chr1 (1-61)||(26676450-26676510)
chr1 (1-61)||(33676985-33677045)
[»] chr4 (7 HSPs)
chr4 (1-62)||(37871138-37871199)
chr4 (1-59)||(23108264-23108322)
chr4 (1-61)||(48640285-48640345)
chr4 (1-61)||(56024596-56024656)
chr4 (1-63)||(9896984-9897046)
chr4 (1-61)||(47590944-47591004)
chr4 (5-62)||(43498857-43498914)
[»] scaffold0074 (1 HSPs)
scaffold0074 (1-63)||(23344-23406)
[»] chr8 (5 HSPs)
chr8 (1-62)||(13090266-13090327)
chr8 (1-63)||(4034780-4034842)
chr8 (1-62)||(45539875-45539936)
chr8 (1-60)||(9932585-9932644)
chr8 (1-29)||(8444740-8444768)
[»] chr6 (4 HSPs)
chr6 (1-62)||(12912739-12912800)
chr6 (7-63)||(18973110-18973166)
chr6 (1-63)||(24393463-24393525)
chr6 (5-61)||(6028880-6028936)
[»] chr2 (3 HSPs)
chr2 (1-63)||(27271207-27271269)
chr2 (11-57)||(11031352-11031398)
chr2 (3-39)||(29739686-29739722)
[»] scaffold0300 (1 HSPs)
scaffold0300 (1-63)||(9136-9198)
[»] chr5 (1 HSPs)
chr5 (1-61)||(26369424-26369484)
[»] chr3 (2 HSPs)
chr3 (1-61)||(10436920-10436980)
chr3 (1-61)||(15029632-15029692)
[»] chr7 (2 HSPs)
chr7 (1-62)||(17194369-17194430)
chr7 (1-29)||(1031817-1031845)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 5 - 200
Target Start/End: Original strand, 19228381 - 19228576
Alignment:
Q  5 gaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattcaaagacattgtacaaaaactcattttagtcaacacaattgag 104  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  19228381 gaataagtgttttgcatcttctatcgtaccgcatccacccatgcaaaactgaacattcaaagacattgtacaaaaactcattttagtcaacacagttgag 19228480  T
Q  105 accaaaattttgcaccaacaatttaaaatttttagtttttggttggaagaggggaaaaagttgggaatgaaaagtgaggttaaagtgtgttgactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19228481 accaaaattttgcaccaacaatttaaaatttttagtttttggttggaagaggggaaaaagttgggaatgaaaagtgaggttaaagtgtgttgactt 19228576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 415 - 557
Target Start/End: Original strand, 19228579 - 19228721
Alignment:
Q  415 aacatttaaatagctacaaaaattgatttcattttnnnnnnntacgatattttattccaaaaatgaaaagattattttattttaattgcaaatggcgggt 514  Q
    |||||||||||||||||||||||| ||||||||||       |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||     
T  19228579 aacatttaaatagctacaaaaattcatttcattttaaaaaaatacgatattttattacaaaaataaaaagattattttattttaattgcaaatggcgggc 19228678  T
Q  515 tttccctccaagttcggttaagtcgttacttttaaataacaga 557  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19228679 tttccctccaagttcggttaagtcgttacttttaaataacaga 19228721  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 34548968 - 34548911
Alignment:
Q  5 gaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  34548968 gaataagtgttttgcgtcttctatcgtaccgcatccacccacgcataactgagcattc 34548911  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 46731682 - 46731622
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||||||||||||||| || ||| ||||||||||| ||||||| |||||||||||    
T  46731682 agaggaataagtgttttgcatcctccatcataccgcatccacccacgcataactgagcatt 46731622  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4532566 - 4532628
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    ||||||||||||||||||||||||||||| | ||||||||  ||||||| || ||| ||||||    
T  4532566 agaggaataagtgttttgcatcttctatcatgccgcatccccccacgcataaatgaacattca 4532628  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26676510 - 26676450
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    ||||||||||||||||||||||  | ||| | ||||||||| ||||||| |||||||||||    
T  26676510 agaggaataagtgttttgcatcccccatcatgccgcatccacccacgcataactgagcatt 26676450  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33676985 - 33677045
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||||||||||||||| || ||| | ||||||||| ||||||| || ||||||||    
T  33676985 agaggaataagtgttttgcatcctccatcatgccgcatccacccacgcataattgagcatt 33677045  T

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Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 37871138 - 37871199
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  37871138 agaggaataagtgttttgcatcttctatcgtaccacatccatccacgcataactgagcattc 37871199  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23108264 - 23108322
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagca 59  Q
    ||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||||||    
T  23108264 agaggaataagtgctttgcatcttttatcgtaccgcatccattcacgcataactgagca 23108322  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48640345 - 48640285
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||||||||||||||| || ||| ||||||||||| ||||||| |||||||||||    
T  48640345 agaggaataagtgttttgcatcctccatcataccgcatccacccacgcataactgagcatt 48640285  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 56024656 - 56024596
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||||| ||||||||| || ||| ||||||||||| | |||||||||||||||||    
T  56024656 agaggaataagtattttgcatcctccatcataccgcatccacctacgcaaaactgagcatt 56024596  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9896984 - 9897046
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    ||||||||||||||||||||||||||||| | ||||||||| |||| || || || |||||||    
T  9896984 agaggaataagtgttttgcatcttctatcatgccgcatccaaccacacataaatgtgcattca 9897046  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 47590944 - 47591004
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||||||||||||||| || ||| |  |||||||| ||||||| |||||||||||    
T  47590944 agaggaataagtgttttgcatcctccatcatgtcgcatccacccacgcataactgagcatt 47591004  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 43498914 - 43498857
Alignment:
Q  5 gaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    ||||||||||||||||||||||||| | |||||||   |||||||||| ||| |||||    
T  43498914 gaataagtgttttgcatcttctatcatgccgcatcgccccacgcaaaaatgaacattc 43498857  T

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Target: scaffold0074 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 23406 - 23344
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  23406 agaggaataagtgttttgcatcttctatcataccgcatccacccacgcataactgagcattca 23344  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13090266 - 13090327
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  13090266 agaggaataagtgttttgcatcttctatcgtaccgcaaccacccacgcataactgagcattc 13090327  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 4034780 - 4034842
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||    
T  4034780 agaggaataagtgtttcgcatcttctatcgtaccgtatccacccacgcataactgagcattca 4034842  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45539936 - 45539875
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    ||||||||||||||||| ||||||||||| | |||||| || ||||||| || |||||||||    
T  45539936 agaggaataagtgtttttcatcttctatcatgccgcatgcacccacgcataaatgagcattc 45539875  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9932585 - 9932644
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcat 60  Q
    |||||||||| ||||||||||| || | | ||||||||||| ||||||| ||||||||||    
T  9932585 agaggaataaatgttttgcatcctccagcataccgcatccacccacgcataactgagcat 9932644  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8444740 - 8444768
Alignment:
Q  1 agaggaataagtgttttgcatcttctatc 29  Q
    |||||||||||||||||||||||||||||    
T  8444740 agaggaataagtgttttgcatcttctatc 8444768  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12912739 - 12912800
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||    
T  12912739 agaggaataagtgttttgcgtcttctatcgtaccgcatccacccacgcataactgagcattc 12912800  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 18973110 - 18973166
Alignment:
Q  7 ataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  18973110 ataagtgttttgcatcttctatcataccgcatccacccacgcataactgagcattca 18973166  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 24393525 - 24393463
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||| |||| || |||||    
T  24393525 agaggaataagtgttttgcatcttctatcataccgcatccacccacgcataactaagtattca 24393463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 6028936 - 6028880
Alignment:
Q  5 gaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||||| ||||| || ||| ||||||||||| |||||||||| ||||||||    
T  6028936 gaataagtgtttagcatcctccatcataccgcatccacccacgcaaaattgagcatt 6028880  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 27271269 - 27271207
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    ||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||| ||||||    
T  27271269 agaggaataagtgttttgcatcttctatcatgccgcatccacccacgcataactgaacattca 27271207  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 11031398 - 11031352
Alignment:
Q  11 gtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgag 57  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||    
T  11031398 gtgttttgcatcttctatcgtaccgcatccacccacgcataactgag 11031352  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 29739722 - 29739686
Alignment:
Q  3 aggaataagtgttttgcatcttctatcgtaccgcatc 39  Q
    |||||||||||||||||||| || |||||||||||||    
T  29739722 aggaataagtgttttgcatcctccatcgtaccgcatc 29739686  T

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Target: scaffold0300 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9198 - 9136
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattca 63  Q
    |||||||||| |||||||||||||||||| | ||||||||  |||||||||| ||| ||||||    
T  9198 agaggaataaatgttttgcatcttctatcatgccgcatccccccacgcaaaaatgaacattca 9136  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26369424 - 26369484
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||| ||||||||||| || | | ||||||||||| ||||||| |||||||||||    
T  26369424 agaggaataaatgttttgcatcctccagcataccgcatccacccacgcataactgagcatt 26369484  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10436920 - 10436980
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||||||||| ||||||||||| || | | ||||||||||| ||||||| |||||||||||    
T  10436920 agaggaataaatgttttgcatcctccagcataccgcatccacccacgcataactgagcatt 10436980  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15029692 - 15029632
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcatt 61  Q
    |||| |||||||| || ||||| || ||| ||||||||||| |||||||||||||||||||    
T  15029692 agagaaataagtgcttagcatcctccatcataccgcatccacccacgcaaaactgagcatt 15029632  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 17194369 - 17194430
Alignment:
Q  1 agaggaataagtgttttgcatcttctatcgtaccgcatccatccacgcaaaactgagcattc 62  Q
    ||||||||||||| |||||||||||||| |||||||| | | |||| || |||| |||||||    
T  17194369 agaggaataagtgatttgcatcttctattgtaccgcaacgacccacacataactaagcattc 17194430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1031845 - 1031817
Alignment:
Q  1 agaggaataagtgttttgcatcttctatc 29  Q
    |||||||||||||||||||||||||||||    
T  1031845 agaggaataagtgttttgcatcttctatc 1031817  T

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