View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_6 (Length: 577)
Name: NF14028_low_6
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 198 - 560
Target Start/End: Original strand, 14720112 - 14720474
Alignment:
| Q |
198 |
tcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttcgaataccaatatcgttgcatgtcatatgttcattcttag |
297 |
Q |
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| T |
14720112 |
tcaaattcatgcatatgtgcacacatcatgaggattgtcataggatgatacaagaagattggaataccaatatcgttggatgtcatatgttcattcttag |
14720211 |
T |
|
| Q |
298 |
ccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaatgtgcataacatggttagagttgctgaacaaaatgttgct |
397 |
Q |
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| T |
14720212 |
tcagaagctcaaaattttgaaacaaaagttgaaagtctggaataaaactgtctttggcaatgtgcataacatggttagagttgctgaacaaaatcttgct |
14720311 |
T |
|
| Q |
398 |
caactgcaatctgatatggatatcaacggtatcactaactctcttttggaacaacacaaagatgcttaatttcaacttgaaaatgctttgctaatataag |
497 |
Q |
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| T |
14720312 |
caactgcaatctgatatggataccaatggtatcactaactctcttttggaacaacacaaagatgctcaatttcaacttgaaaatgctttgctaatataag |
14720411 |
T |
|
| Q |
498 |
aagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaataccaaat |
560 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||| |
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| T |
14720412 |
aagattattggagagagaaatctaaagttgcttggtattcaaatggagacagaaataccaaat |
14720474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 59 - 545
Target Start/End: Complemental strand, 28187931 - 28187445
Alignment:
| Q |
59 |
ttggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatcattttcctttattac |
158 |
Q |
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| T |
28187931 |
ttggatagagtgatttgtaatcaaaactggctggatgtttgcaactctctgaatgtgtcaacactggtaaagcacaagtcggatcactttccactattac |
28187832 |
T |
|
| Q |
159 |
ttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttc |
258 |
Q |
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|||| ||||| ||||| || ||||||||| | || ||||| ||||||||||| ||||||| |||||| | |||||||| ||| ||||||||||||| | |
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| T |
28187831 |
ttgaatttgataattctactcatagttttacttcccaatttaaattcatgcaattgtggacccatcataaagattgtcacagggtgatacaagaagtctg |
28187732 |
T |
|
| Q |
259 |
gaataccaatatcgttgcatgtcatatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaat |
358 |
Q |
| |
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||| || ||||| |||| |||||||| ||||||||||||||||| |||||||| || || |||||||| |||||| |||||||||| | ||||| ||| |
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| T |
28187731 |
gaacacaaatattgttggctgtcatatattcattcttagccagaaactcaaaatcctaaagcaaaagttaaaagtctggaataaaactgtttttggtaat |
28187632 |
T |
|
| Q |
359 |
gtgcataacatggttagagttgctgaacaaaatgttgctcaactgcaatctgatatggatatcaacggtatcactaactctcttttggaacaacacaaag |
458 |
Q |
| |
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||||| |||||||||| ||| || |||||||| |||| || | ||||||| ||||| | || ||||||||| |||| || ||||||||||||| || |
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| T |
28187631 |
gtgcacaacatggttaaagtggcagaacaaaaccttgcccatttacaatctgtcatggacacaaatggtatcactgactccctattggaacaacacagag |
28187532 |
T |
|
| Q |
459 |
atgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggag |
545 |
Q |
| |
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|||| | |||||||||||||||||||| | |||| ||||||| |||||||| |||||||||||| |||||||||||| |||||||| |
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| T |
28187531 |
atgcgcagtttcaacttgaaaatgctttacaaatagaagaagaatattggagggagaaatctaaagttgcttggcatttaaatggag |
28187445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 59 - 560
Target Start/End: Original strand, 7572295 - 7572798
Alignment:
| Q |
59 |
ttggatagagtgatttgtaatcaagattggctagatgcttgcaactctctaaatgtgtccacaatggtaaagcacaagtctgatcattttcctttattac |
158 |
Q |
| |
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||||||||||| |||| ||||||| | |||| |||| ||||| ||||| |||||||| ||| |||||||||| ||||||||||| ||||| | |||| |
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| T |
7572295 |
ttggatagagttatttttaatcaacaccggctggatgtctgcaattctctgaatgtgtcaacactggtaaagcataagtctgatcactttccactgttac |
7572394 |
T |
|
| Q |
159 |
ttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatgaggattgtcataggatgatacaagaagtttc |
258 |
Q |
| |
|
|||| ||||| ||||| | ||||||||| | || ||||| ||||| ||||| |||||||| || ||| | ||||||| ||| ||||||||||||| | |
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| T |
7572395 |
ttgaatttgataattcttctcatagttttgcttcccaatttaaatttatgcaaatgtggacccaccataaagattgtcgcagggtgatacaagaagtctg |
7572494 |
T |
|
| Q |
259 |
gaataccaatatcgttgcatgtcatatgttcattcttagccagaagctcaaaattctgaaacaaaagttgaaagtcaagaataaaactatctttggcaat |
358 |
Q |
| |
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||| || || || |||| |||||||||||||||||| ||||||| || |||||| | || ||||| |||||||| |||||||||| | ||||| ||| |
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| T |
7572495 |
gaacacaaacattgttggttgtcatatgttcattctttgccagaaactaaaaattttaaagcaaaaattgaaagtttggaataaaactgtttttggtaat |
7572594 |
T |
|
| Q |
359 |
gtgcataacatggttagagttgctg--aacaaaatgttgctcaactgcaatctgatatggatatcaacggtatcactaactctcttttggaacaacacaa |
456 |
Q |
| |
|
||||| |||||||||| ||| || | || |||| ||||||| | ||||||| || || | || ||||||| | |||| || | ||||||||||| |
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| T |
7572595 |
gtgcacaacatggttaaagtggcagaaaaaaaaaccttgctcatttacaatctgtcatagacacaaatggtatcaatgactccctaatagaacaacacaa |
7572694 |
T |
|
| Q |
457 |
agatgcttaatttcaacttgaaaatgctttgctaatataagaagattattggagagagaaatctaaacttgcttggcattcaaatggagtcagaaatacc |
556 |
Q |
| |
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|||||| | |||||||||||||||||||| | | || ||||||| |||||||| |||||||||||| || ||||||||| |||||||| ||||| ||| |
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| T |
7572695 |
agatgcgcagtttcaacttgaaaatgctttacaattagaagaagaatattggagggagaaatctaaagttacttggcatttaaatggagatagaaacacc |
7572794 |
T |
|
| Q |
557 |
aaat |
560 |
Q |
| |
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|||| |
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|
| T |
7572795 |
aaat |
7572798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 234
Target Start/End: Original strand, 10009597 - 10009703
Alignment:
| Q |
128 |
aagcacaagtctgatcattttcctttattacttgagtttgaaaattccacacatagtttttcctctcaattcaaattcatgcatatgtggacacatcatg |
227 |
Q |
| |
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||||||||||| |||||||||||| | ||| |||||||||||| ||| |||||||||| || ||||| || || ||||| ||||||| ||||||| |
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| T |
10009597 |
aagcacaagtcagatcattttcctcttttagttgagtttgaaacttctcatcatagttttttgtcgcaatttaagtttatgcaaatgtggattcatcatg |
10009696 |
T |
|
| Q |
228 |
aggattg |
234 |
Q |
| |
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| ||||| |
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|
| T |
10009697 |
aagattg |
10009703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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