View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14028_low_8 (Length: 556)
Name: NF14028_low_8
Description: NF14028
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14028_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 52712290 - 52712813
Alignment:
| Q |
19 |
aggggatggttttgctgacaatgtcggcctctttcgacacattacgcccacaaaaatgtctagcaaaaccgtgccaggaagcaagtcaagctcaaatctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712290 |
aggggatggttttgctgacaatgtcggcctctttcgacacattacgcccacaaaaatgtctagcaaaaccgtgccaggaagcaagtcaagctcaaatctc |
52712389 |
T |
|
| Q |
119 |
attcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttggagcagaccaatttgacgagggagatgaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712390 |
attcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttggagcagaccaatttgacgagggagatgaa |
52712489 |
T |
|
| Q |
219 |
aaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtttatgcacaagata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712490 |
aaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtttatgcacaagata |
52712589 |
T |
|
| Q |
319 |
aactagggtggggttggggttttggaattcccacaataactacggttttatctattgttgttctagctgccggtgttcggtattaccgtttccaaaaggc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52712590 |
aactagggtggggttggggttttggaattcccacaataactacggttttatctatcgttgttctagctgccggtgttcggtattaccgtttccaaaagcc |
52712689 |
T |
|
| Q |
419 |
aatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712690 |
aatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgag |
52712789 |
T |
|
| Q |
519 |
gttgagaccacacactctgatatt |
542 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
52712790 |
gttgagaccacacactctgatatt |
52712813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 52721111 - 52721634
Alignment:
| Q |
19 |
aggggatggttttgctgacaatgtcggcctctttcgacacattacgcccacaaaaatgtctagcaaaaccgtgccaggaagcaagtcaagctcaaatctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| || ||||| ||| |||| |||||||||| |||||||| |
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| T |
52721111 |
aggggatggttttgctgacaatgtcggcctctttcgacacactgcgcccgcagaaatgtctggcgaaaccatgcaaggaggcaagtcaaggccaaatctc |
52721210 |
T |
|
| Q |
119 |
attcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcctttggagcagaccaatttgacgagggagatgaa |
218 |
Q |
| |
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|||||||||||||||||||| || ||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721211 |
cttcttgtacggtgcacttggccttattgctttgggtacaggaggaatcaagccttgtgtatcatcctttggagcagaccaatttgacgagggagatgaa |
52721310 |
T |
|
| Q |
219 |
aaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttcttggaatcacgatattggtttatgcacaagata |
318 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
52721311 |
aaagaagtccaacagaaatacgctttctttaattggtttttctttgctatcaacatgggttctcttcttggaatcacgatattggtttatgcacaagata |
52721410 |
T |
|
| Q |
319 |
aactagggtggggttggggttttggaattcccacaataactacggttttatctattgttgttctagctgccggtgttcggtattaccgtttccaaaaggc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||| |||||| | |
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| T |
52721411 |
aactagggtggggttggggttttggaatacccacaataactatggttttatctatcgttcttctagctgctggtgttcggtattaccgttttcaaaagcc |
52721510 |
T |
|
| Q |
419 |
aatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagaggagtctccgtagaaaatgagcctactctctacgag |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||| ||||||||||| ||| |
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| T |
52721511 |
aatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcgaaaaggagtttccgtagaaaatgaacctactctctatgag |
52721610 |
T |
|
| Q |
519 |
gttgagaccacacactctgatatt |
542 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
52721611 |
gttgagaccacacactctgatatt |
52721634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 86 - 542
Target Start/End: Original strand, 52698538 - 52698994
Alignment:
| Q |
86 |
accgtgccaggaagcaagtcaagctcaaatctcattcttgtacggtgcacttggtctcattgccttaggtaccggaggaatcaaaccttgtgtatcatcc |
185 |
Q |
| |
|
||||||| | |||||||| |||| |||| || ||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||| || || |
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| T |
52698538 |
accgtgcaaagaagcaagccaaggccaaaacttattcttgtatagtgcacttggcctcattgccttgggtactggaggaatcaaaccttgtgtttcctca |
52698637 |
T |
|
| Q |
186 |
tttggagcagaccaatttgacgagggagatgaaaaagaagtccaaaagaaatacgctttctttaattggtttttctttgctatcaacatgggtgctcttc |
285 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| |||||| |||||||||||||| |||| |
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| T |
52698638 |
tttggagctgatcaatttgacgagggagatgaaaaagaagtccaaatgaaattctctttctttaattggttttactttgccatcaacatgggtgcccttc |
52698737 |
T |
|
| Q |
286 |
ttggaatcacgatattggtttatgcacaagataaactagggtggggttggggttttggaattcccacaataactacggttttatctattgttgttctagc |
385 |
Q |
| |
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||||||| || ||||||||||| |||| | || |||||||| |||||||||||| | | ||||||||||||||| || ||||||| ||| | | || |
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| T |
52698738 |
ttggaattacactattggtttatttacaaaaccaagtagggtggagttggggttttgcattacccacaataactacgattatatctatcgttatcttggc |
52698837 |
T |
|
| Q |
386 |
tgccggtgttcggtattaccgtttccaaaaggcaatgggaagcccttttactaggtttcttcaggttattgtagcctccgtcaagaaacatcaaagagga |
485 |
Q |
| |
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| ||| ||| |||||| ||||| ||||| ||||||||||||| || |||||||||||||||||||||||||| || | |||||||||| | ||||| |
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|
| T |
52698838 |
cgttggtattccgtattatcgttttcaaaaaccaatgggaagcccattcactaggtttcttcaggttattgtagcttctataaagaaacatcgaggagga |
52698937 |
T |
|
| Q |
486 |
gtctccgtagaaaatgagcctactctctacgaggttgagaccacacactctgatatt |
542 |
Q |
| |
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||||| ||||||||||| || ||||||| |||||||| |||||| ||||||||||| |
|
|
| T |
52698938 |
gtctcagtagaaaatgaaactcctctctatgaggttgaaaccacatactctgatatt |
52698994 |
T |
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