View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14029_high_1 (Length: 777)

Name: NF14029_high_1
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14029_high_1
NF14029_high_1
[»] chr2 (38 HSPs)
chr2 (9-588)||(9026427-9026997)
chr2 (6-588)||(9020494-9021058)
chr2 (10-489)||(8988089-8988567)
chr2 (22-444)||(9031707-9032120)
chr2 (261-588)||(8973195-8973523)
chr2 (116-588)||(9016238-9016704)
chr2 (374-588)||(9008018-9008232)
chr2 (252-541)||(9030274-9030557)
chr2 (273-588)||(8984588-8984900)
chr2 (248-489)||(8992018-8992260)
chr2 (248-459)||(9023319-9023529)
chr2 (108-357)||(8996098-8996339)
chr2 (293-450)||(8979237-8979395)
chr2 (370-557)||(43850042-43850228)
chr2 (80-245)||(9023133-9023294)
chr2 (84-213)||(8991882-8992013)
chr2 (371-516)||(32918074-32918218)
chr2 (374-588)||(30733985-30734199)
chr2 (379-557)||(19232328-19232504)
chr2 (366-585)||(30731997-30732216)
chr2 (302-494)||(2841008-2841201)
chr2 (83-213)||(8973044-8973176)
chr2 (127-406)||(8975440-8975724)
chr2 (266-322)||(9007956-9008012)
chr2 (469-560)||(8913027-8913118)
chr2 (118-213)||(9030166-9030262)
chr2 (384-485)||(10763878-10763978)
chr2 (18-80)||(8996030-8996092)
chr2 (379-444)||(6471749-6471813)
chr2 (381-444)||(35701893-35701956)
chr2 (645-703)||(8993147-8993205)
chr2 (647-708)||(9018418-9018479)
chr2 (544-588)||(8992299-8992343)
chr2 (645-685)||(9027821-9027861)
chr2 (380-415)||(39814115-39814150)
chr2 (645-687)||(8987384-8987426)
chr2 (430-488)||(8996343-8996401)
chr2 (645-706)||(9018524-9018586)
[»] chr1 (20 HSPs)
chr1 (6-588)||(33987702-33988280)
chr1 (370-588)||(38175426-38175644)
chr1 (366-516)||(14654309-14654458)
chr1 (366-516)||(14664100-14664249)
chr1 (377-588)||(14652525-14652736)
chr1 (377-588)||(14662316-14662527)
chr1 (366-585)||(14708567-14708786)
chr1 (368-585)||(28366098-28366315)
chr1 (366-496)||(14669698-14669827)
chr1 (366-496)||(14706077-14706206)
chr1 (367-516)||(14674471-14674619)
chr1 (366-585)||(14716280-14716499)
chr1 (370-516)||(14681592-14681737)
chr1 (370-496)||(14683743-14683868)
chr1 (367-516)||(14679849-14679997)
chr1 (370-458)||(14676625-14676713)
chr1 (380-557)||(11872408-11872585)
chr1 (374-484)||(14667112-14667221)
chr1 (383-444)||(37422175-37422236)
chr1 (373-444)||(28698549-28698620)
[»] chr4 (12 HSPs)
chr4 (302-585)||(3461042-3461325)
chr4 (302-579)||(11652298-11652575)
chr4 (368-528)||(50077156-50077315)
chr4 (369-588)||(49106425-49106644)
chr4 (370-578)||(49108539-49108747)
chr4 (378-581)||(26984572-26984773)
chr4 (378-485)||(26998740-26998846)
chr4 (405-577)||(21503706-21503877)
chr4 (378-439)||(48205832-48205893)
chr4 (384-437)||(6431957-6432010)
chr4 (379-444)||(41013586-41013651)
chr4 (384-423)||(26982549-26982588)
[»] chr8 (12 HSPs)
chr8 (302-579)||(41841058-41841335)
chr8 (377-557)||(40054312-40054491)
chr8 (371-578)||(44878977-44879183)
chr8 (371-578)||(44880738-44880944)
chr8 (377-530)||(37682057-37682209)
chr8 (302-444)||(42555123-42555266)
chr8 (374-516)||(10944368-10944509)
chr8 (379-463)||(37679757-37679841)
chr8 (302-444)||(42220886-42221027)
chr8 (301-444)||(42091944-42092087)
chr8 (370-420)||(42872514-42872564)
chr8 (394-444)||(44582870-44582920)
[»] chr5 (5 HSPs)
chr5 (336-581)||(3643599-3643843)
chr5 (302-495)||(1716441-1716634)
chr5 (370-579)||(7524961-7525170)
chr5 (381-485)||(4103249-4103352)
chr5 (379-574)||(16037861-16038053)
[»] chr6 (4 HSPs)
chr6 (368-579)||(10795795-10796006)
chr6 (368-585)||(10791551-10791768)
chr6 (377-557)||(30521242-30521421)
chr6 (379-444)||(8875691-8875756)
[»] chr7 (2 HSPs)
chr7 (377-558)||(27134511-27134691)
chr7 (383-458)||(8128149-8128224)
[»] chr3 (1 HSPs)
chr3 (379-425)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (469-538)||(5487-5556)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 588
Target Start/End: Original strand, 9026427 - 9026997
Alignment:
Q  9 ctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaag 108  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||    
T  9026427 ctaacagacacacacaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaag 9026526  T
Q  109 ggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatct--a 206  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||| |  |    
T  9026527 ggataagaaaagaataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtattttta 9026626  T
Q  207 ctctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcc 306  Q
    |||||||    |||||| ||||| ||||||||||||||| ||||| |     ||||    ||||||| ||| ||||||||||||| ||||||||||||||    
T  9026627 ctctgat----tgatgataatgttttaagaataaagaaatcaaagaa-----aaagg---aggaagaaagtctaccaagcaagctgtttcaaaaaagtcc 9026714  T
Q  307 cacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaaga 405  Q
    || |||||||||||| |||||||||||| |||||||| ||||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  9026715 catatcggttgttcaagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaaga 9026814  T
Q  406 tcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttca 505  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  9026815 tcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagtgggagagaccatttca 9026914  T
Q  506 atagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 588  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||  |||||| |||||||||||||||    
T  9026915 atagcttgctattgggtttctcaagtgtcgcctatgctttgcactattgcattggctggcacacccctccaattcaagttcaa 9026997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 588
Target Start/End: Original strand, 9020494 - 9021058
Alignment:
Q  6 attctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagc 105  Q
    ||||||||| | |||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  9020494 attctaacaaacacacacaatagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatacccttagccggttagcccatcaacaaaagc 9020593  T
Q  106 aagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatct 205  Q
    |||| |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||    
T  9020594 aaggaataagataagaatccgatcatgatattttgctttaagacgagaatatcaatttaatttttggcaattcaccatg-tggccaatgtgtatgtatct 9020692  T
Q  206 actctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtc 305  Q
    ||| ||||    |||||| ||||| ||||||||||||||||||||||||||| |||||              ||||||||||||||||||||||||||||    
T  9020693 actttgat----tgatgataatgttttaagaataaagaaaacaaaggaggaaaaaagt--------------ttaccaagcaagctatttcaaaaaagtc 9020774  T
Q  306 ccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaag 404  Q
    | |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||    
T  9020775 ctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggctaag 9020874  T
Q  405 atcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttc 504  Q
    |||||||||||||||||||||||||| |||||||| |||   ||||||||||||| ||| |||||||||||||||||||||||||  ||||| |||||||    
T  9020875 atcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgagaggccatttc 9020974  T
Q  505 aatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 588  Q
    |||| |||||||||||| |||||||| ||| ||||||  |||||||||||||| || |||||||||||||||||||||||||||    
T  9020975 aataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggttggtgcaccccaccaattcaagttcaa 9021058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 10 - 489
Target Start/End: Original strand, 8988089 - 8988567
Alignment:
Q  10 taacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaagg 109  Q
    ||||||| ||||||||||||||| ||||||||| |||    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8988089 taacagacacacacaacagtggctctcaaaaacgaat----gaacacaaagatgaaagatataatagccttagccggttagcccatcaacaaaagcaagg 8988184  T
Q  110 gataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  |||      
T  8988185 gataagataagaatcagatcatgatattttgccttaagacaagaatatcaattttatttttggcaattcatcatgatggcctatgtgtatgtacttacg- 8988283  T
Q  210 tgata-gattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcc 306  Q
    |  || ||||||||| ||||| |||||||||| |||||||||||||||||||||||||  |||||| |||| ||||||||||| | |||||||| |||||    
T  8988284 tactatgattgatgataatgttttaagaataaggaaaacaaaggaggaagaaagtgttttaggaagtgagtctaccaagcaagttgtttcaaaatagtcc 8988383  T
Q  307 cacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaaga 405  Q
    |||||||  |||||| |||||||||||| |||||||||||||||||| ||||||||||  |||||||||||| ||||| |||| ||||||||||| ||||    
T  8988384 cacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttttggcgaaga 8988483  T
Q  406 tcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagg 489  Q
    ||||||||||||| ||||||||||||||||||||||||| |||| | ||||||  | ||||| |||||||||||||||||||||    
T  8988484 tcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttttgagg 8988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 444
Target Start/End: Original strand, 9031707 - 9032120
Alignment:
Q  22 acaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagcaagggataagataaga 121  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  9031707 acaacagtggcactcaaaaacaaatgaatgaacacaaagatgaaagatataatagccttagcaagttagcccatcaacaaaagcaagggataagaaaaga 9031806  T
Q  122 atcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgta--tctactctgatagattg 219  Q
    || ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| || |||||||||||||| ||||  | ||||||    |||||    
T  9031807 ataagatcatgatattttgctttaagacaagaatatcaatttaatttttggcaattcatcacgatggcctatgtgtgtgtatttttactct----gattg 9031902  T
Q  220 atgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgtt 319  Q
    |||| ||||| ||||||||||||||| |||||     | ||||    ||||||| ||| ||||||||||||| ||||||||||||| || |||| |||||    
T  9031903 atgataatgttttaagaataaagaaatcaaag-----aaaaag---gaggaagaaagtctaccaagcaagctgtttcaaaaaagtctcatatcgattgtt 9031994  T
Q  320 catgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtat 418  Q
    || ||||||||||| ||||||||| ||||||||| |||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9031995 caagaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtat 9032094  T
Q  419 ctgttcttatcagtttaatatttgat 444  Q
    ||||||||||||||||||||| ||||    
T  9032095 ctgttcttatcagtttaatatctgat 9032120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 261 - 588
Target Start/End: Original strand, 8973195 - 8973523
Alignment:
Q  261 agtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataag 359  Q
    ||||||||||||||||| |||||||||| || |||||||||||| |||||||| || |||  ||||| |||||| |||||||||||||||||| ||||||    
T  8973195 agtgttaggaagagagtctaccaagcaaactgtttcaaaaaagttccacatcgattattccagaaagtaagtgaagggatgtgatatataaaagcataag 8973294  T
Q  360 cgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatggg 459  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  8973295 cgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatggg 8973394  T
Q  460 ccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgg 559  Q
     ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| || || ||||  |||||||||||||||     
T  8973395 tcacaacaatattaaattacttttttaagggggagagaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgcgttgcactattgcatga 8973494  T
Q  560 gatggtgcaccccaccaattcaagttcaa 588  Q
    | ||| || ||||||||||||||||||||    
T  8973495 gctggcgcgccccaccaattcaagttcaa 8973523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 116 - 588
Target Start/End: Original strand, 9016238 - 9016704
Alignment:
Q  116 ataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatag 215  Q
    |||||| |||||||||||||||||||  |||||||||||||||||||||||||||  ||| |||  ||  ||||| |||||||||||| ||||||         
T  9016238 ataagagtcagatcatgatattttgctataagacaagaatatcaatttaatttttttcaattcataatcgtggcccatgtgtatgtatttactct----a 9016333  T
Q  216 attgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggt 315  Q
    |||||||| ||||| |||||||||||| |||||||| || | ||||||||||||||||||   ||||||||| ||| ||||||| | |||||||||| ||    
T  9016334 attgatgataatgttttaagaataaag-aaacaaagtagaacgaaagtgttaggaagaga--ctaccaagcatgctgtttcaaagatgtcccacatcagt 9016430  T
Q  316 tgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgta 414  Q
    |||||| ||||||||||| | ||||||||||||||||| ||||||||||  ||||||| ||||||||||||  ||| |||||||||||||||||| ||||    
T  9016431 tgttcaagaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgta 9016530  T
Q  415 gtatctgttcttatc---agtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagct 511  Q
    |||||||||||||||   |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  9016531 gtatctgttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagggggagagacaatttcaatagct 9016630  T
Q  512 tgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 588  Q
    ||||||||| |||||   | || || ||||  || ||||||| ||| || ||||| |||||||||||||||||||||    
T  9016631 tgctattggatttct---gtgttgcttatgtgttacactattacattggttggtgaaccccaccaattcaagttcaa 9016704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 374 - 588
Target Start/End: Original strand, 9008018 - 9008232
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  474 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcacccca 573  Q
    |||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||||||| |||||||||||||||  | |||  |||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcgctggcacacccca 9008217  T
Q  574 ccaattcaagttcaa 588  Q
    ||||||| |||||||    
T  9008218 ccaattctagttcaa 9008232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 252 - 541
Target Start/End: Original strand, 9030274 - 9030557
Alignment:
Q  252 gaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataa 350  Q
    |||||||||||||||||||||||  | ||||||||||||| |||||| ||||||||||||||  |||||| ||| |||||||| ||||||||||||||||    
T  9030274 gaggaagaaagtgttaggaagag--tctaccaagcaagctgtttcaagaaagtcccacatcgactgttcaagaatgcaagtgaagggatgtgatatataa 9030371  T
Q  351 aaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 450  Q
    || ||||||| ||  ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||    
T  9030372 aagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtgg 9030471  T
Q  451 cccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatg 541  Q
    | ||||||| ||| ||||||||||||||||||||||||| ||||||     |||||||||||||||||||| |||||||| ||||||||||    
T  9030472 ctcaatgggtcac-acagtattaaattacttttttgagggggagag----gttcaatagcttgctattgggcttctcaagtgtcgcctatg 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 273 - 588
Target Start/End: Original strand, 8984588 - 8984900
Alignment:
Q  273 agagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctt 371  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||| ||||||| ||  ||| ||    
T  8984588 agagtctaccaaacaagctatttcaaaaaagtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatt 8984687  T
Q  372 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtat 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||  || |    
T  8984688 tcaactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgattagtggcctaatgggtcacaatggttt 8984787  T
Q  472 taaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccc 571  Q
    |||||| ||||||||||  | |||  ||||||||||||||||| ||| || || |     || |||| ||  || ||||||||||| || |||  |||||    
T  8984788 taaattgcttttttgagaggtagatgccatttcaatagcttgcgatttggctttt----tgttgcctctgtgttacactattgcattgggtggcacaccc 8984883  T
Q  572 caccaattcaagttcaa 588  Q
    |||||||||||||||||    
T  8984884 caccaattcaagttcaa 8984900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 248 - 489
Target Start/End: Original strand, 8992018 - 8992260
Alignment:
Q  248 aaaggaggaagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatat 346  Q
    ||||||| |||| ||||||||||||||||| |||||||||| || ||||||||||||||||||| |||| |||| ||||| |||||| ||||||||||||    
T  8992018 aaaggagaaagagagtgttaggaagagagtctaccaagcaaactgtttcaaaaaagtcccacattggttattcaagaaagtaagtgaagggatgtgatat 8992117  T
Q  347 ataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgatta 446  Q
    |||||| ||||||||||  | ||||| ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||| ||||||    
T  8992118 ataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgatta 8992217  T
Q  447 gtggcccaatgggccacaacagtattaaattacttttttgagg 489  Q
    ||||||||||||| ||||| | |||||||||||||||||||||    
T  8992218 gtggcccaatgggtcacaataatattaaattacttttttgagg 8992260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 248 - 459
Target Start/End: Original strand, 9023319 - 9023529
Alignment:
Q  248 aaaggaggaagaaagtgtt--aggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcatgaaagcaagtgagg-gatgtgat 344  Q
    |||||||||||||||||||  ||||||||||| ||||||||||    ||  ||||||||||||||||||||||||| |||| ||||||| | ||||||||    
T  9023319 aaaggaggaagaaagtgttttaggaagagagtctaccaagcaa----ttcaaaaaaagtcccacatcggttgttcaagaaatcaagtgaagagatgtgat 9023414  T
Q  345 atataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||||||| ||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  445 tagtggcccaatggg 459  Q
    |||||||||||||||    
T  9023515 tagtggcccaatggg 9023529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 108 - 357
Target Start/End: Original strand, 8996098 - 8996339
Alignment:
Q  108 gggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctac 207  Q
    ||||||||||| |||||||||||| ||||||||| |       ||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8996098 gggataagatacgaatcagatcataatattttgctt-------agaatattaatttaatttttggcaattcaccatgatggcctatgtttatgtatctac 8996190  T
Q  208 tctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtg--ttaggaagagagtttaccaagcaagctatttcaaaaaagtc 305  Q
    | |    ||||||||| ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| | |||||||| ||||    
T  8996191 tat----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttttaggaagagagtctaccaagcaagttgtttcaaaatagtc 8996286  T
Q  306 ccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccata 357  Q
    ||||||||  |||||| |||||||| || ||||||||||||||||||| ||||    
T  8996287 ccacatcgactgttcaagaaagcaactgaagggatgtgatatataaaagcata 8996339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 293 - 450
Target Start/End: Original strand, 8979237 - 8979395
Alignment:
Q  293 tttcaaaaaagtcccacatcggttgttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcgg 391  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||  |||||||||||| ||||||| ||  ||||||||||||||||||||||||||    
T  8979237 tttcaaaaaagtcccacattggttgttcaaggaatcaagtgaagggacttgatatataaaagcataagcaagttcatctttcaactcatacctttctcgg 8979336  T
Q  392 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979337 ccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 8979395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 370 - 557
Target Start/End: Original strand, 43850042 - 43850228
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| | ||||  | |    
T  43850042 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatga-t 43850140  T
Q  470 attaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 557  Q
    ||||||| |||||||||||| ||||||  || |||||||||||||||||||  |||| | | ||||||||||  ||||||||||||||    
T  43850141 attaaatcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcat 43850228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 9023133 - 9023294
Alignment:
Q  80 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatca 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||    
T  9023133 tagccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatactttgctttaagtcaagaatatcaatttaatttttggcaattca 9023232  T
Q  180 ccatgatggcctatgtgtatgtatctactctgatagattgatgacaatgtattaagaataaagaaa 245  Q
     | |||||||||| |||||||||| |||| |    ||||||| | ||||| |||||||||||||||    
T  9023233 tcgtgatggcctaggtgtatgtatttactat----gattgatcataatgttttaagaataaagaaa 9023294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 84 - 213
Target Start/End: Original strand, 8991882 - 8992013
Alignment:
Q  84 cggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcacc 181  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| |||      
T  8991882 cggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgctttaagacaagaatatcaatttaatttttgcttcaattcata 8991981  T
Q  182 atgatggcctatgtgtatgtatctactctgat 213  Q
    |||||||||||||||||||||| |||||||||    
T  8991982 atgatggcctatgtgtatgtatttactctgat 8992013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 371 - 516
Target Start/End: Original strand, 32918074 - 32918218
Alignment:
Q  371 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagta 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||    
T  32918074 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgata 32918172  T
Q  471 ttaaattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    ||||||||||||||||||| |||||  ||||| || ||||||||||    
T  32918173 ttaaattacttttttgagggggagaagccattgcagtagcttgcta 32918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 374 - 588
Target Start/End: Original strand, 30733985 - 30734199
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 473  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||  | |||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatga-tatta 30734083  T
Q  474 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcacccc 572  Q
    |||||||||||| ||| |||||  |||||| | |||||||||| | || ||||| || ||||||  ||  ||||||||||||| |||  ||| |||||||    
T  30734084 aattactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcacccc 30734183  T
Q  573 accaattcaagttcaa 588  Q
    |||||| |||||||||    
T  30734184 accaatccaagttcaa 30734199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 379 - 557
Target Start/End: Complemental strand, 19232504 - 19232328
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 478  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||  ||| |||| |||| ||| ||| ||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcac-acaatattaaatta 19232407  T
Q  479 cttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 557  Q
    | ||||||||| |||||  ||| |||||||||||||||||||| |||||||| ||| | ||||  ||||||||||||||    
T  19232406 cctttttgagggggagaagccacttcaatagcttgctattgggcttctcaagtgtcacttatgcgttgcactattgcat 19232328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 366 - 585
Target Start/End: Original strand, 30731997 - 30732216
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||  ||| |    
T  30731997 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcac-a 30732095  T
Q  466 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatgg 564  Q
    |  ||||||||||||||||||||| || ||| ||| ||   |||||||||| | || |||||  | || | | |||  ||||||||| ||| |||  |||    
T  30732096 cgatattaaattacttttttgagggggggaggccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctgg 30732195  T
Q  565 tgcaccccaccaattcaagtt 585  Q
    |||||||||||||||||||||    
T  30732196 tgcaccccaccaattcaagtt 30732216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 302 - 494
Target Start/End: Complemental strand, 2841201 - 2841008
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaa-ctcatacctttctcggccttttgg 399  Q
    |||||||||||||||||| | ||||||||||||| |||||||| |||||||| || | |||||  | | ||| |  ||||||||||||||||||||||||    
T  2841201 agtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttgg 2841102  T
Q  400 ctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggag 494  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||  ||||||  ||| ||  ||||||||||||||||||||| ||||    
T  2841101 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcac-acgatattaaattacttttttgagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 8973044 - 8973176
Alignment:
Q  83 ccggttagcccatcaacaaaagcaagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttg--gcaaatcac 180  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||   ||| |||     
T  8973044 ccggttagcctatcaacaaaagcaagggataagataagaatcagatcatgatattttgcttcaagacaagaatatcaatttaatttttgcttcaattcat 8973143  T
Q  181 catgatggcctatgtgtatgtatctactctgat 213  Q
     ||| ||||||||||||| |||| |||||||||    
T  8973144 aatggtggcctatgtgtaagtatttactctgat 8973176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 127 - 406
Target Start/End: Original strand, 8975440 - 8975724
Alignment:
Q  127 atcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatctactctgatagattgatgacaa 226  Q
    |||||||||||||   ||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| |||||||||    |||||| ||    
T  8975440 atcatgatatttttgtttaagactagaatatcaatttaattgttggcaattcatcatgatggcctatgtgtatgtatttactctgat----tgatgataa 8975535  T
Q  227 tgtattaagaataaagaaa------acaaaggagg---aagaaagtgttaggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttg 317  Q
    ||| |||||||||| ||||      | ||| ||     |||| |  |  ||||||||||||||||||||||| | ||||||||||||||| ||||   ||    
T  8975536 tgttttaagaataacgaaatttgtaagaaaagaaatcaaagataaagg-aggaagagagtttaccaagcaagttgtttcaaaaaagtcccccatcaactg 8975634  T
Q  318 ttcatgaaagcaagtga-gggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagat 406  Q
    || | |||| ||||||| |||||||||||||||||| ||||||||||  || |||||||||||||  |||||  ||||||||||||||||    
T  8975635 tttaagaaatcaagtgaagggatgtgatatataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 266 - 322
Target Start/End: Original strand, 9007956 - 9008012
Alignment:
Q  266 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9007956 taggaagagagtttaccaagcaagctatttcaaaaaagtcccacatcggttgttcat 9008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 469 - 560
Target Start/End: Original strand, 8913027 - 8913118
Alignment:
Q  469 tattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatggg 560  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||   ||||||||||  |||||||||||||||||    
T  8913027 tattaaattacttttttgagggggagagaccatttcagtagcttgctattggtttcctcatttgtcgcctatgcattgcactattgcatggg 8913118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 9030166 - 9030262
Alignment:
Q  118 aagaatcagatcatgatattttgccttaagacaagaatatcaatttaa-tttttggcaaatcaccatgatggcctatgtgtatgtatctactctgat 213  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||||| | ||| |||||||||    
T  9030166 aagaatcagatcgtgatatttggctttaagacaagaatatcaatttaattttttgacaattcatcatgatggcctatgtgtgtctatttactctgat 9030262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 485
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttt 483  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||  ||||  |||||| |||  ||| |||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtcca-tacaatattaaattactttt 10763880  T
Q  484 tt 485  Q
    ||    
T  10763879 tt 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 8996030 - 8996092
Alignment:
Q  18 acacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagcctt 80  Q
    ||||||||| ||||||||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  8996030 acacacaactgtggcactcaaaaacaaatgaaagaacacaaagatgaaagatataataacctt 8996092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 6471813 - 6471749
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgat 6471749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 35701893 - 35701956
Alignment:
Q  381 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| |||||||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgat 35701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 703
Target Start/End: Original strand, 8993147 - 8993205
Alignment:
Q  645 ccattgaaagaatttcaaaatgtctagccttctcacaacttgcaagtgcactaaggagc 703  Q
    ||||||||||||||| | ||||||||||||| |||||||||||  | ||||||||||||    
T  8993147 ccattgaaagaattttataatgtctagccttgtcacaacttgcgcgcgcactaaggagc 8993205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 647 - 708
Target Start/End: Original strand, 9018418 - 9018479
Alignment:
Q  647 attgaaagaatttcaaaatgtctagccttctcacaacttgcaagtgcactaaggagctgcgt 708  Q
    ||||||||||||||| ||||||||||||| |||||||||||    |||||||||||| ||||    
T  9018418 attgaaagaatttcataatgtctagccttgtcacaacttgcgctcgcactaaggagcggcgt 9018479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 544 - 588
Target Start/End: Original strand, 8992299 - 8992343
Alignment:
Q  544 ttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 588  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  8992299 ttgcactattgcatgggctggcgcacccctccaattcaagttcaa 8992343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 645 - 685
Target Start/End: Original strand, 9027821 - 9027861
Alignment:
Q  645 ccattgaaagaatttcaaaatgtctagccttctcacaactt 685  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  9027821 ccattgaaagaatttcacaatgtctagccttgtcacaactt 9027861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 415
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  380 tacctttctcggccttttggctaagatcaagtgtag 415  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 687
Target Start/End: Original strand, 8987384 - 8987426
Alignment:
Q  645 ccattgaaagaatttcaaaatgtctagccttctcacaacttgc 687  Q
    ||||||||||||||||| |||||| |||||| |||||||||||    
T  8987384 ccattgaaagaatttcataatgtccagccttatcacaacttgc 8987426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 430 - 488
Target Start/End: Original strand, 8996343 - 8996401
Alignment:
Q  430 agtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgag 488  Q
    |||| ||||| |||||||||||||||||   |||||  |||||||||||||||||||||    
T  8996343 agttcaatatatgattagtggcccaatgaatcacaatggtattaaattacttttttgag 8996401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 645 - 706
Target Start/End: Original strand, 9018524 - 9018586
Alignment:
Q  645 ccattgaaagaatttcaaaatgtctagccttctcacaacttgca-agtgcactaaggagctgc 706  Q
    |||||||| |||||||| ||||||||||||| |||||||| |||  | |||||||||||||||    
T  9018524 ccattgaaggaatttcagaatgtctagccttgtcacaactcgcatcgcgcactaaggagctgc 9018586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 6 - 588
Target Start/End: Original strand, 33987702 - 33988280
Alignment:
Q  6 attctaacagaaacacacaacagtggcactcaaaaacaaataaatgaacacaaaaatgaaagatataatagccttagccggttagcccatcaacaaaagc 105  Q
    ||||||||||| || |||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  33987702 attctaacagacacgcacaactgtggcactcaaaa-caaatgaatgaacacaaagatgaaagatataatagccttacccggttagtccatcaacaaaagc 33987800  T
Q  106 aagggataagataagaatcagatcatgatattttgccttaagacaagaatatcaatttaatttttggcaaatcaccatgatggcctatgtgtatgtatct 205  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  33987801 aagggataagataagaatcagatcatgatattttgctgtaagacaagaatattaatttaatttttggcaattcatcatgatggactatgtgtatgtatct 33987900  T
Q  206 actctgatagattgatgacaatgtattaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaccaagcaa-gctatttcaaaaaagt 304  Q
    |||||    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||  || ||||||||||||    
T  33987901 actct----gattgatgataatgttttaagaataaagaaaacaaaggaggaagaaagtgttaggaagagagtttaacatgcaaccctgtttcaaaaaagt 33987996  T
Q  305 cccacatcggttgttcatgaaagcaagtg-agggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaa 403  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||| |||||| |||  ||||||||||||||||||||||||||||||||||||||    
T  33987997 cccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggctaa 33988096  T
Q  404 gatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccattt 503  Q
    |||||||||||||||||||||||||||||||||||| ||||  ||||| ||||| | ||| ||  ||||||||||||||||| ||| |||||| ||||||    
T  33988097 gatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcac-acgatattaaattacttttttaagggggagaggccattt 33988195  T
Q  504 caatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 588  Q
    ||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||  ||  || |||||||||| ||||||||||||    
T  33988196 caatagcttgctattgggtttttcaagtgtcgcttatgctctgcactattgcaaaggccggcgcaccccaccgattcaagttcaa 33988280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 370 - 588
Target Start/End: Complemental strand, 38175644 - 38175426
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||| ||| ||  |    
T  38175644 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcac-acgat 38175546  T
Q  470 attaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat-gggatggtgca 568  Q
    |||||||||||||||||||| ||||| ||||  ||| |||||||||  ||||||| ||| | ||||| ||||  |||||||||| |||  |  ||| |||    
T  38175545 attaaattacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgca 38175446  T
Q  569 ccccaccaattcaagttcaa 588  Q
    |||||||||||| |||||||    
T  38175445 ccccaccaattctagttcaa 38175426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 14654458 - 14654309
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14654458 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14654360  T
Q  466 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    |  ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  14654359 cgatattaaattacttttttgagggggagaggccacttcagtagcttgcta 14654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 366 - 516
Target Start/End: Complemental strand, 14664249 - 14664100
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14664249 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14664151  T
Q  466 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    |  ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  14664150 cgatattaaattacttttttgagggggagaggccacttcagtagcttgcta 14664100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 377 - 588
Target Start/End: Original strand, 14652525 - 14652736
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaat 14652623  T
Q  477 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcaccccacc 575  Q
    ||||||||||||| |||||  |||||| | |||||||||| | || ||||| || ||  || |||  ||||||||| ||| |||  ||| ||||||||||    
T  14652624 tacttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacc 14652723  T
Q  576 aattcaagttcaa 588  Q
    |||||||||||||    
T  14652724 aattcaagttcaa 14652736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 377 - 588
Target Start/End: Original strand, 14662316 - 14662527
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaat 14662414  T
Q  477 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcaccccacc 575  Q
    ||||||||||||| |||||  |||||| | |||||||||| | || ||||| || ||  || |||  ||||||||| ||| |||  ||| ||||||||||    
T  14662415 tacttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacc 14662514  T
Q  576 aattcaagttcaa 588  Q
    |||||||||||||    
T  14662515 aattcaagttcaa 14662527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 366 - 585
Target Start/End: Original strand, 14708567 - 14708786
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14708567 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14708665  T
Q  466 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatgg 564  Q
    |  ||||||||||||||||||||| ||||||  || || | |||||||||||| || |||||  | |||| | |||  ||||||||  ||| |||  |||    
T  14708666 cgatattaaattacttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctgg 14708765  T
Q  565 tgcaccccaccaattcaagtt 585  Q
     ||||||||||||||||||||    
T  14708766 cgcaccccaccaattcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 368 - 585
Target Start/End: Complemental strand, 28366315 - 28366098
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtg-gcccaatgggccacaac 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| ||| ||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcac-ac 28366217  T
Q  467 agtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtg 566  Q
      ||||||||||||||||| ||| |||||||| |||  | |||||||||| | ||| | ||| | ||||  ||||  |||||||||||||| || ||| |    
T  28366216 gatattaaattacttttttaagggggagagactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcattggctggcg 28366117  T
Q  567 caccccaccaattcaagtt 585  Q
    || |||||||||| |||||    
T  28366116 catcccaccaattaaagtt 28366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 366 - 496
Target Start/End: Complemental strand, 14669827 - 14669698
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14669827 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14669729  T
Q  466 cagtattaaattacttttttgaggaggagag 496  Q
    |  ||||||||||||||||||||| ||||||    
T  14669728 cgatattaaattacttttttgagggggagag 14669698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 366 - 496
Target Start/End: Original strand, 14706077 - 14706206
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14706077 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14706175  T
Q  466 cagtattaaattacttttttgaggaggagag 496  Q
    |  ||||||||||||||||||||| ||||||    
T  14706176 cgatattaaattacttttttgagggggagag 14706206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 367 - 516
Target Start/End: Original strand, 14674471 - 14674619
Alignment:
Q  367 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaac 466  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||      
T  14674471 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14674570  T
Q  467 agtattaaattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    | ||||||||||||||||||||| |||||  |||||| | ||||||||||    
T  14674571 a-tattaaattacttttttgagggggagaagccattttagtagcttgcta 14674619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 366 - 585
Target Start/End: Original strand, 14716280 - 14716499
Alignment:
Q  366 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||  ||| |    
T  14716280 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcac-a 14716378  T
Q  466 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatgg 564  Q
    |  ||||||||||||||||||||| |||||| | | || | |||||||||| |     ||||  | |||||| |||  ||||||||| ||| |||  |||    
T  14716379 cgatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattggcttgg 14716478  T
Q  565 tgcaccccaccaattcaagtt 585  Q
    |||||||||||||||||||||    
T  14716479 tgcaccccaccaattcaagtt 14716499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 370 - 516
Target Start/End: Original strand, 14681592 - 14681737
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 469  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  |    
T  14681592 tttcaacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgat 14681690  T
Q  470 attaaattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    |||||||||||||||||||| |||||  |||||| | ||||||||||    
T  14681691 attaaattacttttttgagggggagaagccattttagtagcttgcta 14681737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 370 - 496
Target Start/End: Original strand, 14683743 - 14683868
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  |    
T  14683743 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgat 14683841  T
Q  470 attaaattacttttttgaggaggagag 496  Q
    |||||||||||||||||||| ||||||    
T  14683842 attaaattacttttttgagggggagag 14683868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 367 - 516
Target Start/End: Original strand, 14679849 - 14679997
Alignment:
Q  367 atctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaac 466  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||      
T  14679849 atcttccaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatg 14679948  T
Q  467 agtattaaattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    | ||||||||||||||||||||| |||||  |||| | | ||||||||||    
T  14679949 a-tattaaattacttttttgagggggagaagccatattagtagcttgcta 14679997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 370 - 458
Target Start/End: Original strand, 14676625 - 14676713
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgg 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||    
T  14676625 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatgg 14676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 380 - 557
Target Start/End: Complemental strand, 11872585 - 11872408
Alignment:
Q  380 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattac 479  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||  ||||  ||||||| ||| ||  |||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcac-acgatattaaattac 11872487  T
Q  480 -ttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 557  Q
     |||||| ||| |||||| ||||||| |||||||||||||| | || ||||| || || ||||  |||||||| |||||    
T  11872486 tttttttaagggggagaggccatttcgatagcttgctattgagcttttcaagtgtagcttatgtgttgcactactgcat 11872408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 374 - 484
Target Start/End: Complemental strand, 14667221 - 14667112
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| |||||||  ||||  | |||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatga-tatta 14667123  T
Q  474 aattacttttt 484  Q
    |||||||||||    
T  14667122 aattacttttt 14667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 383 - 444
Target Start/End: Original strand, 37422175 - 37422236
Alignment:
Q  383 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgat 37422236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 373 - 444
Target Start/End: Original strand, 28698549 - 28698620
Alignment:
Q  373 caactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||| |||||||||||||    
T  28698549 caactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgat 28698620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 2e-73; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 302 - 585
Target Start/End: Complemental strand, 3461325 - 3461042
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| ||||  | ||||||||||||| ||||| || ||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||    
T  3461325 agtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttctcggccttttggc 3461226  T
Q  401 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacca 500  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||| | ||||||| ||| ||  ||||||||||||||||| ||| |||||  |||    
T  3461225 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcac-acgatattaaattacttttttaagggggagaagcca 3461127  T
Q  501 tttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagtt 585  Q
    ||||||||||||||||||||||||||| || |||| |||||  |||||||||||||| || |||  |||||||||||| ||||||    
T  3461126 tttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcataggctggcacaccccaccaatacaagtt 3461042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 302 - 579
Target Start/End: Complemental strand, 11652575 - 11652298
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| ||||||||||| |||| |   ||||||| |||||||||||||||||||||||||||    
T  11652575 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttggc 11652476  T
Q  401 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacca 500  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||| ||  |||||||||| |||||||||| |||||  |||    
T  11652475 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcac-acgatattaaattatttttttgagggggagaagcca 11652377  T
Q  501 tttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaatt 579  Q
     | |||||||||||||||||| ||||  || ||||||||||  ||||||||||||||||| ||| ||||||||||||||    
T  11652376 ctccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgcatgggctggcgcaccccaccaatt 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 368 - 528
Target Start/End: Complemental strand, 50077315 - 50077156
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||  ||||  |    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatga 50077216  T
Q  468 gtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctca 528  Q
     ||||||||||||||||||||| |||||  ||| |||||||||||||||||||| ||||||    
T  50077215 -tattaaattacttttttgagggggagaagccacttcaatagcttgctattgggcttctca 50077156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 369 - 588
Target Start/End: Complemental strand, 49106644 - 49106425
Alignment:
Q  369 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacag 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||      
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 49106546  T
Q  469 tattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtgc 567  Q
    ||||||||||||||||||||| |||||   ||  | | |||||||||| ||| ||||| | | |||||  |||  ||||||||||||||| | | || ||    
T  49106545 tattaaattacttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgc 49106446  T
Q  568 accccaccaattcaagttcaa 588  Q
    ||||||||||||| |||||||    
T  49106445 accccaccaattctagttcaa 49106425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 370 - 578
Target Start/End: Complemental strand, 49108747 - 49108539
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| | ||||||| ||| ||  |    
T  49108747 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcac-acgat 49108649  T
Q  470 attaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtgca 568  Q
    |||||||||||||||||||| |||||   |||  || ||||||||||||||  |||| | | |||||  |||  ||||||||||||||| | | || |||    
T  49108648 attaaattacttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgca 49108549  T
Q  569 ccccaccaat 578  Q
    ||||||||||    
T  49108548 ccccaccaat 49108539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 581
Target Start/End: Complemental strand, 26984773 - 26984572
Alignment:
Q  378 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatt 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaatt 26984675  T
Q  478 acttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaa 577  Q
    |||||||  |||  ||||| |    | | |||||||||  | ||  ||||||| ||||||| ||  ||||||||||||||||| ||| ||| ||||||||    
T  26984674 actttttaaagggagagagtctgcct-agtagcttgctgcttgggctctcaagtgtcgcctttgcgttgcactattgcatgggctggcgcatcccaccaa 26984576  T
Q  578 ttca 581  Q
    ||||    
T  26984575 ttca 26984572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 378 - 485
Target Start/End: Complemental strand, 26998846 - 26998740
Alignment:
Q  378 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatt 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaatt 26998748  T
Q  478 actttttt 485  Q
    ||||||||    
T  26998747 actttttt 26998740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 405 - 577
Target Start/End: Original strand, 21503706 - 21503877
Alignment:
Q  405 atcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttc 504  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||| |||| || ||| ||  |||||||||| |||||||||| |||||   |||  |    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcac-acgatattaaattatttttttgagggggagaagtcatcac 21503804  T
Q  505 aatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaa 577  Q
    |||||||||||||||   |||||||| ||||| ||||  |||||||||||||| || ||| ||||||||||||    
T  21503805 aatagcttgctattgaacttctcaagtgtcgcttatgcgttgcactattgcataggctggcgcaccccaccaa 21503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 48205832 - 48205893
Alignment:
Q  378 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 439  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatat 48205893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 437  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 444
Target Start/End: Complemental strand, 41013651 - 41013586
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||| ||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgat 41013586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 423
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  384 tttctcggccttttggctaagatcaagtgtagtatctgtt 423  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 302 - 579
Target Start/End: Complemental strand, 41841335 - 41841058
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||| | ||||||||||||| |||||||| |||||||| || |||| |   |||||||||||||||||||||||||||||||||||    
T  41841335 agtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggc 41841236  T
Q  401 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacca 500  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||| ||| ||  ||||||||||||||||||| | |||||  |||    
T  41841235 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcac-acgatattaaattacttttttgatggggagaagcca 41841137  T
Q  501 tttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaatt 579  Q
       |||||||||||||||||| ||||| || ||||||||||  ||||||||||||||||| ||| |||||||| |||||    
T  41841136 ccccaatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgcatgggctggcgcaccccatcaatt 41841058  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 40054312 - 40054491
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||  ||  ||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtca-tacgatattaaat 40054410  T
Q  477 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 557  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||| |||| ||| ||||| ||||  ||||||||||||||    
T  40054411 tacttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcat 40054491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 371 - 578
Target Start/End: Original strand, 44878977 - 44879183
Alignment:
Q  371 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagta 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||| ||||  | ||    
T  44878977 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatga-ta 44879075  T
Q  471 ttaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcacc 570  Q
    ||||||||||||||||||| |||||   |||  ||||||||||||||||   ||||  || ||||| ||||  |||||||||||||| || ||| |||||    
T  44879076 ttaaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgcgttgcactattgcataggctggcgcacc 44879175  T
Q  571 ccaccaat 578  Q
    ||||||||    
T  44879176 ccaccaat 44879183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 371 - 578
Target Start/End: Complemental strand, 44880944 - 44880738
Alignment:
Q  371 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagta 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||| ||||  | ||    
T  44880944 ttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatga-ta 44880846  T
Q  471 ttaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcacc 570  Q
    ||||||||||||||||||| |||||   |||  ||||||||||||||||   ||||  || ||||| ||||  |||||||||||||| || ||| |||||    
T  44880845 ttaaattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgcgttgcactattgcataggctggcgcacc 44880746  T
Q  571 ccaccaat 578  Q
    ||||||||    
T  44880745 ccaccaat 44880738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 377 - 530
Target Start/End: Original strand, 37682057 - 37682209
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 476  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccac-acgatattaaat 37682155  T
Q  477 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaag 530  Q
    |  |||||| |||| ||||| |||    |||||||||||||| ||| |||||||    
T  37682156 ttgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaag 37682209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 302 - 444
Target Start/End: Complemental strand, 42555266 - 42555123
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||| | ||||||||||||| |||||||||||||||||||  |||  ||  || |||||||||||||||||||| |  ||||||||    
T  42555266 agtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatcttttggc 42555167  T
Q  401 taagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||||||||||| || ||||||| ||||||||||||||||||||    
T  42555166 taagatcaagtgcagaatctgtttttatcagtttaatatttgat 42555123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 374 - 516
Target Start/End: Complemental strand, 10944509 - 10944368
Alignment:
Q  374 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 473  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| | |||||  ||| ||  |||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcac-acgatatta 10944411  T
Q  474 aattacttttttgaggaggagagaccatttcaatagcttgcta 516  Q
    |||||||||||||| | |||||  |||||| | ||||||||||    
T  10944410 aattacttttttgatggggagaagccattttagtagcttgcta 10944368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 379 - 463
Target Start/End: Original strand, 37679757 - 37679841
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccac 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| ||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccac 37679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 302 - 444
Target Start/End: Complemental strand, 42221027 - 42220886
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgagggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggct 401  Q
    |||||||||||| | ||||  ||||| |||||  |||| ||| |||||||| || | ||||| | | |||||||||||||| ||| |||| |||||||||    
T  42221027 agtcccacatcgctagttctagaaagtaagtggtggatatgagatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggct 42220928  T
Q  402 aagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||    
T  42220927 aagatcaagtgtagtatct-ttcttattagtttaatatctgat 42220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 301 - 444
Target Start/End: Original strand, 42091944 - 42092087
Alignment:
Q  301 aagtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttgg 399  Q
    ||||||||||||||| ||||| |||||||| |||| |||  ||| ||||||||||| |||| |   ||||||| |||||||||||||||  ||||||||     
T  42091944 aagtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgccttttg- 42092042  T
Q  400 ctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||| || ||||||| ||| |||||||||||||||||||| ||||    
T  42092043 ctaaaattaagtgtaatatttgttcttatcagtttaatatctgat 42092087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 370 - 420
Target Start/End: Complemental strand, 42872564 - 42872514
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 420  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872564 tttcaactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 44582870 - 44582920
Alignment:
Q  394 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 44582920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 5e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 336 - 581
Target Start/End: Original strand, 3643599 - 3643843
Alignment:
Q  336 ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 435  Q
    |||||||  |||||||| || ||||||||    |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643599 ggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagttta 3643698  T
Q  436 atatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcg 535  Q
    |||| ||||  |||||||| |||| ||| ||  ||||||||||||||||| ||| ||||| || ||  |||||||||||||||||||||||| || || |    
T  3643699 atatctgatatgtggcccattgggtcac-acgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggtttctcgagtgttg 3643797  T
Q  536 cctatgatttgcactattgcatgggatggtgcaccccaccaattca 581  Q
    | ||||  |||||||||||||| || ||| ||||||||||||||||    
T  3643798 cttatgtgttgcactattgcattggctggcgcaccccaccaattca 3643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 302 - 495
Target Start/End: Complemental strand, 1716634 - 1716441
Alignment:
Q  302 agtcccacatcggttgttcatgaaagcaagtgag-ggatgtgatatataaaaccataagcgagaacatctttcaactcatacctttctcggccttttggc 400  Q
    |||||||||||| | ||||| ||||||||||||| |||||||| ||||||||  | |||||||  ||||||| |||||||||||||||||||||||||||    
T  1716634 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 1716536  T
Q  401 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg-cccaatgggccacaacagtattaaattacttttttgaggaggaga 495  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  |||| || |||||| ||| ||  ||||||||||||||||| ||| |||||    
T  1716535 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcac-acgatattaaattacttttttaagggggaga 1716441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 370 - 579
Target Start/End: Original strand, 7524961 - 7525170
Alignment:
Q  370 tttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 469  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||  ||| ||  |    
T  7524961 tttcaagtcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcac-acgat 7525059  T
Q  470 attaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtgca 568  Q
    |||||||||||||||||||| |||||| ||   | | |||||||||  ||||||||||| | |||| | |||  ||||||||||||||||| | || |||    
T  7525060 attaaattacttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgca 7525159  T
Q  569 ccccaccaatt 579  Q
    |||||||||||    
T  7525160 ccccaccaatt 7525170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 381 - 485
Target Start/End: Original strand, 4103249 - 4103352
Alignment:
Q  381 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattact 480  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| | |||| ||  ||||||||| ||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccac-acgatattaaattgct 4103347  T
Q  481 ttttt 485  Q
    |||||    
T  4103348 ttttt 4103352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 379 - 574
Target Start/End: Original strand, 16037861 - 16038053
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 478  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||||||| |||||| | |||||| || |||  ||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttga-tagtggtctaatgggtca-aacgatattaaatta 16037957  T
Q  479 cttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccac 574  Q
    ||||||||| | | | |   |||  ||| ||||||||| |||| |||||  | ||||| ||||  |||||||||||||| || ||| |||||||||    
T  16037958 cttttttgaagggaaaaagtcatcacaagagcttgctaatgggcttctcgtgtgtcgcttatgtgttgcactattgcatcggttggcgcaccccac 16038053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 2e-54; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 368 - 579
Target Start/End: Complemental strand, 10796006 - 10795795
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||| ||| ||     
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcac-acg 10795908  T
Q  468 gtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtg 566  Q
     ||||||||||||||||||||| |||||  ||| ||||||||||||||||| || |||||| | ||||| | ||  ||||||||||||||| | | |||     
T  10795907 atattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgcttgtgcgttgcactattgcatgagttaggta 10795808  T
Q  567 caccccaccaatt 579  Q
    |||||||||||||    
T  10795807 caccccaccaatt 10795795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 368 - 585
Target Start/End: Complemental strand, 10791768 - 10791551
Alignment:
Q  368 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||| ||||  |    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  468 gtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtg 566  Q
     ||||||||||||||||||||| |||||  ||| ||||||||||||||||| || |||||| | |||||   ||  ||||||||||||||| | | |||     
T  10791668 -tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcatgagttaggta 10791570  T
Q  567 caccccaccaattcaagtt 585  Q
    |||||||||||||| ||||    
T  10791569 caccccaccaattctagtt 10791551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 377 - 557
Target Start/End: Original strand, 30521242 - 30521421
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 476  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||  |||| |||  |   ||| ||  |||| |||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcac-acgatattcaat 30521340  T
Q  477 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 557  Q
    |  |||||||||| |||||| ||| | | ||||||||||||||||| ||||||| |||| || || |||||||||||||||    
T  30521341 ttattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcat 30521421  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 379 - 444
Target Start/End: Original strand, 8875691 - 8875756
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 444  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgat 8875756  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 377 - 558
Target Start/End: Original strand, 27134511 - 27134691
Alignment:
Q  377 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 476  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  ||||||||| ||||  |||| | |||| | || |||  ||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtca-aacgatattaaat 27134609  T
Q  477 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatg 558  Q
    ||||||||||||| |||||   ||  ||||||| ||||| ||||| |||||| | |||||  |||  |||||||||||||||    
T  27134610 tacttttttgagggggagaagacacctcaatagtttgctgttgggcttctcatgtgtcgctcatgcgttgcactattgcatg 27134691  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 458
Target Start/End: Original strand, 8128149 - 8128224
Alignment:
Q  383 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgg 458  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| ||||  |||| |||||||    
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg 8128224  T

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Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 425
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  379 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 425  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

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Target: scaffold0549 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 469 - 538
Target Start/End: Original strand, 5487 - 5556
Alignment:
Q  469 tattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcct 538  Q
    |||||||||  |||||||||| |||||| |||   ||||||||||||||||||| ||||||| |||||||    
T  5487 tattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctcaagtgtcgcct 5556  T

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