View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_high_12 (Length: 281)
Name: NF14029_high_12
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 263
Target Start/End: Original strand, 39296780 - 39297032
Alignment:
| Q |
10 |
aatatcaagtatctagaagtcgcattaaatctaggttattctaaattgagtcaaaaagggaaattgagactacagaaattaacattaaaaattatttatt |
109 |
Q |
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| T |
39296780 |
aatatcaagtatctagaagtcgtattaaatctaggttattctaaattgagtcaaaaagggaaattgagactatagaaattaacattaaaaattatttatt |
39296879 |
T |
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| Q |
110 |
ttgcttgttttgaaagaaaatctatttcaacagaaattttacttcaattttacattgactaatgctattcnnnnnnnnncttgaaaggatgactaatgct |
209 |
Q |
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| T |
39296880 |
ttgcttgttttgaaagaaaatctatttcaaaagaaattttacttcaattttacattgactaatgctattc-ttttttttcttgaaaggatgactaatgct |
39296978 |
T |
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| Q |
210 |
atcttagttaccaattagaggttatgtcgacgggttaagtaacaatgacttcat |
263 |
Q |
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| T |
39296979 |
atcttagttaccaattagaggttatgtcgacgggttaagtaacaatgacttcat |
39297032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 232
Target Start/End: Original strand, 39303102 - 39303249
Alignment:
| Q |
83 |
agaaattaacattaaaaattatttattttgcttgttttgaaagaaaatctatttcaacagaaattttacttcaattttacattgactaatgctattcnnn |
182 |
Q |
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| T |
39303102 |
agaaattaacaataaaaattatttattttacttgttttgaaagaaaatctatttcaaaagaaaatttactgcaattttacattgactaattctat--ctt |
39303199 |
T |
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| Q |
183 |
nnnnnncttgaaaggatgactaatgctatcttagttaccaattagaggtt |
232 |
Q |
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| T |
39303200 |
ttttttcttgaaaggatgactaatattaccttagttaccaattagaggtt |
39303249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 39303058 - 39303102
Alignment:
| Q |
10 |
aatatcaagtatctagaagtcgcattaaatctaggttattctaaa |
54 |
Q |
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| T |
39303058 |
aatatcaagtatctagaagtcgcattaaatctaggttattataaa |
39303102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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