View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_high_5 (Length: 482)
Name: NF14029_high_5
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 43527842 - 43527624
Alignment:
| Q |
19 |
cagcctaccagaagcgactcgctgaagcatgcaacatgcatgacagaaccagaatcctggccttcaagaacaagcctccaacaccagtcgagctcttccc |
118 |
Q |
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| T |
43527842 |
cagcctaccagaagcgactcgctgaagcatgcaacatgcatgacagaaccagaatcttggccttcaagaacaagcctccaacaccagtcgagctcttccc |
43527743 |
T |
|
| Q |
119 |
taaggaacttctgtcccctccacctctatccaaatccgctaagcctaaacgatgcattcctcaggttatttctttcaagttcttgtttgtttatgtaatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43527742 |
taaggaacttctgtcccctccacctctatccaaatccgctaagcctaaacgatgcattcctcaggttatttctttcaagttcttgtttgtttatgtaatc |
43527643 |
T |
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| Q |
219 |
atcatgtaatcaatgattt |
237 |
Q |
| |
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||||||||||||||||||| |
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| T |
43527642 |
atcatgtaatcaatgattt |
43527624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 303 - 475
Target Start/End: Complemental strand, 43527558 - 43527386
Alignment:
| Q |
303 |
gcagacttctgagaggaccttggacgcacctgatatcttagatgacttttacttgaatttgctagactggggtagcagcaatgttgttagtattgccctt |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43527558 |
gcagacttctgagaggaccttggacgcacctgatatcttagatgacttttacttgaatttgctagactggggtagcagcaatgttgtcagtattgccctt |
43527459 |
T |
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| Q |
403 |
gaaaataccgtttatctttggaatgcttcagattcctccacttcagagcttgtcactgtagatgatgatgatg |
475 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43527458 |
gaaaataccgtttatctttggaatgcttcagattcctccacttcagagcttgtcactgtagatgatgatgatg |
43527386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 303 - 468
Target Start/End: Complemental strand, 13120030 - 13119865
Alignment:
| Q |
303 |
gcagacttctgagaggaccttggacgcacctgatatcttagatgacttttacttgaatttgctagactggggtagcagcaatgttgttagtattgccctt |
402 |
Q |
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|||||||| ||| |||| ||||||||| ||| |||||||||| |||||||||||||| ||| | |||||| ||||| ||||||||||| |||| ||| || |
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| T |
13120030 |
gcagacttatgaaaggatcttggacgccccttatatcttagacgacttttacttgaacttgttggactggagtagccgcaatgttgttggtatcgccatt |
13119931 |
T |
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| Q |
403 |
gaaaataccgtttatctttggaatgcttcagattcctccacttcagagcttgtcactgtagatgat |
468 |
Q |
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||||| |||||||||| ||||||||||| || | |||| ||||||||||||||| || |||||| |
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| T |
13119930 |
gaaaactccgtttatctgtggaatgcttctgacacttccagttcagagcttgtcacggtggatgat |
13119865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 16693439 - 16693544
Alignment:
| Q |
331 |
cctgatatcttagatgacttttacttgaatttgctagactggggtagcagcaatgttgttagtattgcccttgaaaataccgtttatctttggaatgctt |
430 |
Q |
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|||||||||| || ||||||||| ||||||| |||| |||||||| |||||| |||| || ||||| ||||||||||||||||||||||||||| |
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| T |
16693439 |
cctgatatctcaggagacttttacacgaatttgttagattggggtagtgataatgttattagcatcgccctccaaaataccgtttatctttggaatgctt |
16693538 |
T |
|
| Q |
431 |
cagatt |
436 |
Q |
| |
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|||||| |
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| T |
16693539 |
cagatt |
16693544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 331 - 436
Target Start/End: Original strand, 17667675 - 17667780
Alignment:
| Q |
331 |
cctgatatcttagatgacttttacttgaatttgctagactggggtagcagcaatgttgttagtattgcccttgaaaataccgtttatctttggaatgctt |
430 |
Q |
| |
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|||||||||| || ||||||||| ||||||| |||| |||||||| |||||| |||| || ||||| ||||||||||||||||||||||||||| |
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| T |
17667675 |
cctgatatctcaggagacttttacacgaatttgttagattggggtagtgataatgttattagcatcgccctccaaaataccgtttatctttggaatgctt |
17667774 |
T |
|
| Q |
431 |
cagatt |
436 |
Q |
| |
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|||||| |
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| T |
17667775 |
cagatt |
17667780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 432
Target Start/End: Complemental strand, 19026688 - 19026611
Alignment:
| Q |
355 |
ttgaatttgctagactggggtagcagcaatgttgttagtattgcccttgaaaataccgtttatctttggaatgcttca |
432 |
Q |
| |
|
|||||||| |||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19026688 |
ttgaatttattagattggggttgcagcaatgtccttagtattgcccttgaaaatgatgtttatctttggaatgcttca |
19026611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 432
Target Start/End: Original strand, 20727948 - 20728025
Alignment:
| Q |
355 |
ttgaatttgctagactggggtagcagcaatgttgttagtattgcccttgaaaataccgtttatctttggaatgcttca |
432 |
Q |
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|||||||| |||| |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20727948 |
ttgaatttattagattggggttgcagcaatgtccttagtattgcccttgaaaatgatgtttatctttggaatgcttca |
20728025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 16693147 - 16693251
Alignment:
| Q |
24 |
taccagaagcgactcgctgaagcatgcaacatgcatgacagaaccagaatcctggccttcaagaacaagcctccaacaccagtcgagctcttccctaagg |
123 |
Q |
| |
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|||||||| ||||| || ||||| || |||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| || || || ||||||||| |
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| T |
16693147 |
taccagaaacgacttgcggaagcctgtaacatgaatgacagaacccgaatattggcctttaagaacaagcctccaataccggtggaacttgtccctaagg |
16693246 |
T |
|
| Q |
124 |
aactt |
128 |
Q |
| |
|
||||| |
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|
| T |
16693247 |
aactt |
16693251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 17667383 - 17667487
Alignment:
| Q |
24 |
taccagaagcgactcgctgaagcatgcaacatgcatgacagaaccagaatcctggccttcaagaacaagcctccaacaccagtcgagctcttccctaagg |
123 |
Q |
| |
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|||||||| ||||| || ||||| || |||||| ||||||||||| |||| ||||||| |||||||||||||||| ||| || || || ||||||||| |
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| T |
17667383 |
taccagaaacgacttgcggaagcctgtaacatgaatgacagaacccgaatattggcctttaagaacaagcctccaataccggtggaacttgtccctaagg |
17667482 |
T |
|
| Q |
124 |
aactt |
128 |
Q |
| |
|
||||| |
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|
| T |
17667483 |
aactt |
17667487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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