View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_high_6 (Length: 408)
Name: NF14029_high_6
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 37 - 348
Target Start/End: Complemental strand, 34062622 - 34062311
Alignment:
| Q |
37 |
aactatattgatacatgcatatctaaattattaaatcattggtaacattttattagccatgaaattgtaattcccaatctcaattggtcaaaacaatgaa |
136 |
Q |
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| T |
34062622 |
aactatattgatacatgcatatctaaattattaaatcattggtaacattttattaaccatgaaattgtaattcccaatctcaattggtcaaaacaatgaa |
34062523 |
T |
|
| Q |
137 |
aaatatgaactctagaattctcctaaaccaaaattaccatgaaacaaaacaaccaaggtgactcgtgaacaccatagtcatcatgaattaaattgaacat |
236 |
Q |
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| T |
34062522 |
aaatatgaactctagaattctcctaaaccaaaattaccatgaaacaaaacaaccaaggtgacccgtgaacaccatagtcatcatgaattaaattgaacat |
34062423 |
T |
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| Q |
237 |
taatgaaactctaaaccaaaattaccatgacatgtcccacacaacacaacatagatctcacaacatgaaagcatgacagagtaaaaggttttctttccag |
336 |
Q |
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| T |
34062422 |
taatgaaactctaaaccaaaattaccatgacatgtcccacacaacacaacatagatctcacaacatgaaagcatgacagagtaaaaggttttctttccag |
34062323 |
T |
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| Q |
337 |
acagcaacaatg |
348 |
Q |
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|||||||||||| |
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| T |
34062322 |
acagcaacaatg |
34062311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 34062684 - 34062646
Alignment:
| Q |
7 |
tcgaagaatatttagaagaaaataacattgaactatatt |
45 |
Q |
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||||| || |||||||||||||||||||||||||||||| |
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| T |
34062684 |
tcgaacaaaatttagaagaaaataacattgaactatatt |
34062646 |
T |
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