View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_high_8 (Length: 375)
Name: NF14029_high_8
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 356
Target Start/End: Complemental strand, 26034194 - 26033848
Alignment:
| Q |
11 |
cagagacatcaaaaacatcttt-cataactaaactaatcgcgtttaccctataaattgcagggagaccagttgatagttggaaatttgggcgattctcgt |
109 |
Q |
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| T |
26034194 |
cagagacatcaaaaacatcttttcataattaaactaatcgtgtttaccctataaattgcagggagaccagttgatagttggaaatttgggcgattctcgt |
26034095 |
T |
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| Q |
110 |
gcagttctttgcacaagggatagagatcaacttattgctgttcaacttaccgttgatttgaaaccggatattccaagtaagtattggtatatcaatattg |
209 |
Q |
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| T |
26034094 |
gcagttctttgcacaagggatagagatcaacttattgctgttcaacttaccgttgatttgaaaccggatattccaagtaagtattggtatatcgatattg |
26033995 |
T |
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| Q |
210 |
acatcaattctcaaggtattatacaagcctatcaaatctaatcgcaattttatcaatgtttcaggtgaagcttcaagaatctgtagctgtgaaggaaggg |
309 |
Q |
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| T |
26033994 |
acatcaattctcaaggtattatacaagcctatcaaatctaatcgcaattttatcaatgtttcaggtgaagcttcaagaatctgtagctgtgaaggaaggg |
26033895 |
T |
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| Q |
310 |
ttttcgcagcggaagaagaaccggatgtgtacagaatatggatgcct |
356 |
Q |
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| T |
26033894 |
ttttcgcagcggaagaagaaccggatgtgtacagaatatggatgcct |
26033848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 125
Target Start/End: Original strand, 3705588 - 3705651
Alignment:
| Q |
62 |
aaattgcagggagaccagttgatagttggaaatttgggcgattctcgtgcagttctttgcacaa |
125 |
Q |
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| T |
3705588 |
aaattccagggtgaccaattgataattggcaatttgggcgattctcgtgcagtactttgcacaa |
3705651 |
T |
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