View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_low_13 (Length: 276)
Name: NF14029_low_13
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 38567243 - 38566997
Alignment:
| Q |
11 |
cagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatccggcaagacctga |
110 |
Q |
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| T |
38567243 |
cagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatccggcaagacctga |
38567144 |
T |
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| Q |
111 |
ggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgacaattatcaatttg |
210 |
Q |
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| T |
38567143 |
ggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgacaattatcagtttg |
38567044 |
T |
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| Q |
211 |
gtagagagattctatgatccacaggcaggtgaagttcttatcgatgg |
257 |
Q |
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| T |
38567043 |
gtagagagattctatgatccacaggcaggtgaagttcttatcgatgg |
38566997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 38526118 - 38525872
Alignment:
| Q |
11 |
cagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttcagttatccggcaagacctga |
110 |
Q |
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| T |
38526118 |
cagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgagatagagttgaaagaagtttatttcagttatccggcaagacctga |
38526019 |
T |
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| Q |
111 |
ggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaaagtcgacaattatcaatttg |
210 |
Q |
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| T |
38526018 |
ggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcggcattggttggacaaagtggaagtggaaagtccacagttattagtttg |
38525919 |
T |
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| Q |
211 |
gtagagagattctatgatccacaggcaggtgaagttcttatcgatgg |
257 |
Q |
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| T |
38525918 |
gtagaaagattctatgatccacaggccggtgaagtacttatcgatgg |
38525872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 51199472 - 51199554
Alignment:
| Q |
166 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
248 |
Q |
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| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttct |
51199554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 51145408 - 51145548
Alignment:
| Q |
91 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
189 |
Q |
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| T |
51145408 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51145506 |
T |
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| Q |
190 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
231 |
Q |
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| T |
51145507 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51145548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 231
Target Start/End: Original strand, 51156549 - 51156689
Alignment:
| Q |
91 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
189 |
Q |
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| T |
51156549 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51156647 |
T |
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| Q |
190 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
231 |
Q |
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| T |
51156648 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51156689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 235
Target Start/End: Original strand, 51212627 - 51212687
Alignment:
| Q |
175 |
caaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacagg |
235 |
Q |
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| T |
51212627 |
caaagtgggagtggaaaatcaacagtgataaatttgatagagagattttatgatccacagg |
51212687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
166 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
248 |
Q |
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||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
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| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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