View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14029_low_15 (Length: 249)

Name: NF14029_low_15
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14029_low_15
NF14029_low_15
[»] chr1 (8 HSPs)
chr1 (7-249)||(9111581-9111843)
chr1 (184-249)||(43254127-43254193)
chr1 (192-248)||(1953708-1953764)
chr1 (192-249)||(24981202-24981259)
chr1 (184-247)||(38825519-38825583)
chr1 (192-249)||(12141692-12141749)
chr1 (192-246)||(4242612-4242666)
chr1 (196-249)||(49387645-49387699)
[»] chr6 (8 HSPs)
chr6 (102-181)||(4845943-4846023)
chr6 (192-249)||(19697885-19697942)
chr6 (184-247)||(3835701-3835765)
chr6 (208-249)||(6591889-6591930)
chr6 (20-62)||(4846055-4846097)
chr6 (184-249)||(14579631-14579697)
chr6 (215-249)||(24044972-24045006)
chr6 (202-249)||(24041669-24041717)
[»] chr8 (7 HSPs)
chr8 (122-179)||(41739972-41740029)
chr8 (192-249)||(1788939-1788996)
chr8 (192-249)||(21185361-21185418)
chr8 (192-249)||(39655739-39655796)
chr8 (192-249)||(17028375-17028432)
chr8 (192-249)||(17558811-17558868)
chr8 (10-51)||(41740144-41740185)
[»] chr4 (10 HSPs)
chr4 (184-249)||(895455-895520)
chr4 (192-249)||(6667759-6667816)
chr4 (192-249)||(44643473-44643530)
chr4 (184-249)||(31767487-31767553)
chr4 (10-62)||(895315-895367)
chr4 (192-238)||(6671436-6671482)
chr4 (184-249)||(43287860-43287926)
chr4 (148-185)||(895382-895419)
chr4 (208-249)||(13010573-13010614)
chr4 (188-247)||(4747204-4747264)
[»] chr7 (8 HSPs)
chr7 (184-249)||(15569578-15569644)
chr7 (187-246)||(2609644-2609704)
chr7 (184-249)||(13815750-13815816)
chr7 (184-249)||(32352468-32352534)
chr7 (212-249)||(11674041-11674078)
chr7 (192-247)||(31206668-31206723)
chr7 (192-246)||(39426494-39426548)
chr7 (192-249)||(31210115-31210172)
[»] chr5 (5 HSPs)
chr5 (184-249)||(13291965-13292031)
chr5 (193-249)||(39292120-39292176)
chr5 (192-249)||(18594835-18594892)
chr5 (194-249)||(26703057-26703113)
chr5 (194-249)||(26972790-26972846)
[»] scaffold0028 (2 HSPs)
scaffold0028 (184-249)||(110133-110198)
scaffold0028 (184-249)||(127712-127777)
[»] chr2 (6 HSPs)
chr2 (192-249)||(2590521-2590578)
chr2 (192-249)||(18739151-18739208)
chr2 (192-249)||(21189422-21189479)
chr2 (196-249)||(27083129-27083183)
chr2 (221-249)||(10941464-10941492)
chr2 (221-249)||(10947333-10947361)
[»] scaffold0076 (3 HSPs)
scaffold0076 (186-249)||(6800-6863)
scaffold0076 (111-164)||(6910-6964)
scaffold0076 (33-90)||(7006-7062)
[»] chr3 (6 HSPs)
chr3 (184-249)||(2353208-2353274)
chr3 (184-249)||(9372251-9372317)
chr3 (184-249)||(19930075-19930140)
chr3 (7-76)||(16366541-16366611)
chr3 (148-180)||(16366508-16366540)
chr3 (185-249)||(26445133-26445198)
[»] scaffold0014 (1 HSPs)
scaffold0014 (208-249)||(82658-82699)
[»] scaffold0216 (1 HSPs)
scaffold0216 (184-249)||(12125-12191)
[»] scaffold0293 (1 HSPs)
scaffold0293 (192-248)||(4965-5022)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 249
Target Start/End: Complemental strand, 9111843 - 9111581
Alignment:
Q  7 aaaatatgttggaagtatatatgataataacatagtgctttttacgatggacaatagctgaagcacgctttttaccagaagcat---------------- 90  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  9111843 aaaatatgttggaagtatatatgataataacacagtgctttttacgatggacaatagctgaagcacgctttttaccagaagcatacccaaaatatatact 9111744  T
Q  91 ----ttttagaatttgggaaacaattcttgatcagaaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcctggttacc 186  Q
        ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9111743 ttctttttagaatttgggaaacacttcttgatcagaaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcctggttacc 9111644  T
Q  187 tctgatatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  9111643 tctgatatgatttatatcagtgaagaactgttgtatcctgggaagatatgcgcttatgaggcg 9111581  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 43254127 - 43254193
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||||||||||||  | ||||||| |||||||| ||||||||||||||||||||||||||    
T  43254127 acctctgatatgattcatatatgggaagaacatgttgtatcctgggaggatatgcgcttatgaggcg 43254193  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 1953708 - 1953764
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggc 248  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||| ||||||||||||    
T  1953708 tatgattcataacagggaagaactgttgtatcctgggaggatattcgcttatgaggc 1953764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 24981259 - 24981202
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||| ||||||||||||    
T  24981259 tatgattcataacggggaagaactgttgtatcctgggaggatatgtgcttatgaggcg 24981202  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 38825583 - 38825519
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaact-gttgtattctgggaggatatgcgcttatgagg 247  Q
    |||| |||||||||||||| ||| |||||||| ||||||| ||||||||||||||| ||||||||    
T  38825583 acctttgatatgattcatagcagagaagaacttgttgtatcctgggaggatatgcgtttatgagg 38825519  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 12141749 - 12141692
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||| || |||||||| ||||||||||||||||||||||||||    
T  12141749 tatgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcg 12141692  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 4242666 - 4242612
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgag 246  Q
    ||||||||||| | | ||||||| ||||||| ||||||||||||||||| |||||    
T  4242666 tatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgag 4242612  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 49387699 - 49387645
Alignment:
Q  196 attcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||| ||||| ||||||| |||||||| |||||||||||||||||||| |||||    
T  49387699 attcacatcagggaagaacatgttgtatcctgggaggatatgcgcttataaggcg 49387645  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 4846023 - 4845943
Alignment:
Q  102 gggaaacaattcttgatcagaaaa-taccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcctgg 181  Q
    |||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4846023 gggagacacttcttgatcagaaaaataccacttttccaccaacacaaaagctctttctttcttcccaatttttcttcctgg 4845943  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 19697942 - 19697885
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||    
T  19697942 tatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcg 19697885  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 3835765 - 3835701
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaact-gttgtattctgggaggatatgcgcttatgagg 247  Q
    ||||||||||||||| ||||||| |||||| | ||||||| ||| ||||||||||||||||||||    
T  3835765 acctctgatatgatttatatcagagaagaatttgttgtatcctgagaggatatgcgcttatgagg 3835701  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 6591930 - 6591889
Alignment:
Q  208 gaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  6591930 gaagaactgttgcatcctgggaggatatgcgcttatgaggcg 6591889  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 4846097 - 4846055
Alignment:
Q  20 agtatatatgataataacatagtgctttttacgatggacaata 62  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||    
T  4846097 agtatatatgataataagatagtactttttacaatggacaata 4846055  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 14579631 - 14579697
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||| | ||||||||| |||| ||||||| |||||||| ||| |||||||| |||||||||||||    
T  14579631 acctcttacatgattcatgtcagagaagaacctgttgtatcctgagaggatattcgcttatgaggcg 14579697  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 24045006 - 24044972
Alignment:
Q  215 tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||| ||||||||||||||||||||||||||    
T  24045006 tgttgtatcctgggaggatatgcgcttatgaggcg 24044972  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 249
Target Start/End: Complemental strand, 24041717 - 24041669
Alignment:
Q  202 atcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||| ||||||| |||||||| || |||||||||||||||||||||||    
T  24041717 atcagggaagaacatgttgtatcctaggaggatatgcgcttatgaggcg 24041669  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 41740029 - 41739972
Alignment:
Q  122 aaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcct 179  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  41740029 aaaataccacttttccaccaacacaaaaactctttctttcttctcaatttttcttcct 41739972  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 1788996 - 1788939
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||    
T  1788996 tatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcg 1788939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 21185418 - 21185361
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | |||||||| || ||| ||||||||||||||||||||||||||    
T  21185418 tatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcg 21185361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 39655796 - 39655739
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | |||||||||||||||  ||||||||||||| |||||||||||    
T  39655796 tatgattcataacggagaagaactgttgtatcatgggaggatatgcacttatgaggcg 39655739  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 17028375 - 17028432
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||  ||| ||||||||||||||||| ||||||||    
T  17028375 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcg 17028432  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 17558811 - 17558868
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||  ||| ||||||||||||||||| ||||||||    
T  17558811 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcg 17558868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 41740185 - 41740144
Alignment:
Q  10 atatgttggaagtatatatgataataacatagtgctttttac 51  Q
    ||||||||| | ||||||||||||||||| ||||||||||||    
T  41740185 atatgttgggaatatatatgataataacaaagtgctttttac 41740144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 895455 - 895520
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||||||||||| || |||||||| |||||| ||||||||||||||||||||||||||    
T  895455 acctctgatatgattcatattagggaagaacttttgtatcctgggaggatatgcgcttatgaggcg 895520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 6667816 - 6667759
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||    
T  6667816 tatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcg 6667759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 44643473 - 44643530
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||    
T  44643473 tatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcg 44643530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 31767553 - 31767487
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| ||||||||||||| ||||||| |||||||| || |||||||||| ||||||||||||    
T  31767553 acctctgatgtgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcg 31767487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 895315 - 895367
Alignment:
Q  10 atatgttggaagtatatatgataataacatagtgctttttacgatggacaata 62  Q
    |||| |||| |||||||||||||||||||||||| ||||||| ||||||||||    
T  895315 atatcttgggagtatatatgataataacatagtgttttttactatggacaata 895367  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 6671482 - 6671436
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcg 238  Q
    ||||||||||| | | ||||||||||||||| |||||||||||||||    
T  6671482 tatgattcataacggggaagaactgttgtatcctgggaggatatgcg 6671436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 43287860 - 43287926
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| ||||||||||| | ||||||  |||||||| |||| | |||||||||||||||||||    
T  43287860 acctctgatgtgattcatatctgagaagaatatgttgtatcctggaaagatatgcgcttatgaggcg 43287926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 895382 - 895419
Alignment:
Q  148 aaactctttctttcttcccaatttttcttcctggttac 185  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  895382 aaacactttctttcttcccaatttttcttcctagttac 895419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 13010614 - 13010573
Alignment:
Q  208 gaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| ||| || |||||||||||||||||||||||    
T  13010614 gaagaactgttatatcctaggaggatatgcgcttatgaggcg 13010573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 4747204 - 4747264
Alignment:
Q  188 ctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgagg 247  Q
    |||||||||||||||  || ||||||| ||||||||  ||||||||||| |||||||||||    
T  4747204 ctgatatgattcatacaagcgaagaacctgttgtatcttgggaggatatacgcttatgagg 4747264  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 15569578 - 15569644
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||    
T  15569578 acctctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcg 15569644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 2609704 - 2609644
Alignment:
Q  187 tctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgag 246  Q
    |||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||    
T  2609704 tctgatatgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgag 2609644  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 13815750 - 13815816
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| ||||||| || || ||||||| |||||||| |||||| |||||||||||||||||||    
T  13815750 acctctgatgtgattcacattagggaagaacatgttgtatcctgggaagatatgcgcttatgaggcg 13815816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 32352534 - 32352468
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| ||||||||||| | ||||||  |||||| | ||||||||||||||||||||||||||    
T  32352534 acctctgatgtgattcatatctgagaagaatatgttgtgtcctgggaggatatgcgcttatgaggcg 32352468  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 11674041 - 11674078
Alignment:
Q  212 aactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  11674041 aactgttgtatcctgggaggatatgcgcttatgaggcg 11674078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 31206723 - 31206668
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgagg 247  Q
    ||||||||||| | | ||||||||||||||| |||  |||||||||||||||||||    
T  31206723 tatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgagg 31206668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 39426548 - 39426494
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgag 246  Q
    ||||||||||| ||| ||||||||||| |||  ||||||||||| ||||||||||    
T  39426548 tatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgag 39426494  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 31210172 - 31210115
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||  | |||||||||||| |||||||||||    
T  31210172 tatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcg 31210115  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 13291965 - 13292031
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||    
T  13291965 acctctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcg 13292031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 39292120 - 39292176
Alignment:
Q  193 atgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||| | | |||||||||||||||||||| |||||||||||||||||||||    
T  39292120 atgattcataacggagaagaactgttgtattctggaaggatatgcgcttatgaggcg 39292176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 18594835 - 18594892
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||| ||| ||| ||||||||||||||||||    
T  18594835 tatgattcataacggggaagaactgttgtatcctgtgagaatatgcgcttatgaggcg 18594892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 26703113 - 26703057
Alignment:
Q  194 tgattcatatcagtgaagaact-gttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| ||| |||||||| |||||||  |||||||||||||| ||||||||||    
T  26703113 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcg 26703057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 26972846 - 26972790
Alignment:
Q  194 tgattcatatcagtgaagaact-gttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| ||| |||||||| |||||||  |||||||||||||| ||||||||||    
T  26972846 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcg 26972790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 110133 - 110198
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||| |||||||||||||| |||||||||||||||  |||||||||||||| ||||||||||    
T  110133 acctctgacatgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcg 110198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 127712 - 127777
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||| |||||||||||||| |||||||||||||||  |||||||||||||| || |||||||    
T  127712 acctctgacatgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcg 127777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 2590521 - 2590578
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||    
T  2590521 tatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcg 2590578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Complemental strand, 18739208 - 18739151
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||||||| |||||||| |||||||||||||||||||||||||    
T  18739208 tatgattcataacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcg 18739151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 21189422 - 21189479
Alignment:
Q  192 tatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||| | | ||| ||||||||||| | ||||||||||||||||||||||||    
T  21189422 tatgattcataacggggaataactgttgtatccggggaggatatgcgcttatgaggcg 21189479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 27083183 - 27083129
Alignment:
Q  196 attcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||| || ||||||| |||||||| |||||||||||||||||| |||||||    
T  27083183 attcatattagggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcg 27083129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 10941492 - 10941464
Alignment:
Q  221 attctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||||||||||||||||||||    
T  10941492 attctgggaggatatgcgcttatgaggcg 10941464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 221 - 249
Target Start/End: Complemental strand, 10947361 - 10947333
Alignment:
Q  221 attctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||||||||||||||||||||    
T  10947361 attctgggaggatatgcgcttatgaggcg 10947333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 6863 - 6800
Alignment:
Q  186 ctctgatatgattcatatcagtgaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||||||||||||| ||| |||||||||||  ||| ||||||||| |||||||||||    
T  6863 ctctgatatgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcg 6800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 6964 - 6910
Alignment:
Q  111 ttcttgatcagaaaa-taccacttttccaccaacacaaaaactctttctttcttc 164  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||    
T  6964 ttcttgatcagaaaaataccacttttccaccaacataaaaactctttttttcttc 6910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 7062 - 7006
Alignment:
Q  33 ataacatagtgctttttacgatggacaatagctgaagcacgctttttaccagaagcat 90  Q
    |||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||    
T  7062 ataagatagtgctttttacgatggacaataccagaagcacgc-ttttaccagaagcat 7006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 2353208 - 2353274
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||| |||||||||||||||| ||||||| |||||||| ||||||||||| || |||||||||||    
T  2353208 acctcttatatgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcg 2353274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 9372317 - 9372251
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||| |||||||||||||||| || |||| |||||||| |||||| |||||||||||||||||||    
T  9372317 acctctcatatgattcatatcagggatgaacctgttgtatcctgggacgatatgcgcttatgaggcg 9372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 19930140 - 19930075
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||| |||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||    
T  19930140 acctctgatgtgattcatctcagggaagaacatgttgtat-ctgggaggatatgcgcttatgaggcg 19930075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 16366611 - 16366541
Alignment:
Q  7 aaaatatgttggaagtatatatgataataacatagtg-ctttttacgatggacaatagctgaagcacgctt 76  Q
    ||||||| |||| |||||||||||||||||| |||||  ||||||||||||||||||  | ||||||||||    
T  16366611 aaaatatcttgggagtatatatgataataacgtagtgtttttttacgatggacaatacatcaagcacgctt 16366541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 16366540 - 16366508
Alignment:
Q  148 aaactctttctttcttcccaatttttcttcctg 180  Q
    |||||||||||||||||||||||||||||||||    
T  16366540 aaactctttctttcttcccaatttttcttcctg 16366508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 26445198 - 26445133
Alignment:
Q  185 cctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||||||||||||| ||||||| ||||||||  ||  ||||||| || ||||||||||    
T  26445198 cctctgatatgattcatatcagggaagaacatgttgtatcttgacaggatatacgattatgaggcg 26445133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 82658 - 82699
Alignment:
Q  208 gaagaactgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  82658 gaagaactgttgtatcctgggaggatatgcgcttatgaggcg 82699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 12125 - 12191
Alignment:
Q  184 acctctgatatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggcg 249  Q
    |||||||||||||||||||| || ||||||| |||||||| || ||| ||||||||||| |||||||    
T  12125 acctctgatatgattcatataagggaagaacttgttgtatcctaggatgatatgcgcttgtgaggcg 12191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 5022 - 4965
Alignment:
Q  192 tatgattcatatcagtgaagaac-tgttgtattctgggaggatatgcgcttatgaggc 248  Q
    ||||||||||||||  ||||||| ||||||||  |||||||||||| |||||||||||    
T  5022 tatgattcatatcatagaagaacctgttgtatcttgggaggatatgtgcttatgaggc 4965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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