View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_low_18 (Length: 231)
Name: NF14029_low_18
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 220
Target Start/End: Complemental strand, 42769526 - 42769324
Alignment:
| Q |
18 |
gttccatgtttatctcttcctcctctcactttccctatgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaaccttt |
117 |
Q |
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| T |
42769526 |
gttccatgtttatctcttcctcctctcactttccctatgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaaccttt |
42769427 |
T |
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| Q |
118 |
caaaaatgcatgaatcttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcatct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42769426 |
caaaaatgcatgaatcttcctacacaacaagcctcaatagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcattt |
42769327 |
T |
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| Q |
218 |
cac |
220 |
Q |
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||| |
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| T |
42769326 |
cac |
42769324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 2452042 - 2452207
Alignment:
| Q |
55 |
tgtttccttcctcacattgttttctcatctcactgcacaacagaaacttccactaaaacctttcaaaaatgcatgaatcttcctacacaacaagcctcaa |
154 |
Q |
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||||||||||||||||||| ||| |||||||||||||| |||||| || ||||||||||| |||||||| ||||||||||| || ||||||||||| | |
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| T |
2452042 |
tgtttccttcctcacattggtttttcatctcactgcactgtagaaacctctactaaaaccttccaaaaatgtatgaatcttcccacccaacaagcctcta |
2452141 |
T |
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| Q |
155 |
tagcatggactttacaccctcatagctccaccttagaactaattttctttggcactttcatctcac |
220 |
Q |
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| T |
2452142 |
tagcatggactttctaccctcataactccaccttagaactagtcttctttggaaccttcatttcac |
2452207 |
T |
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