View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_low_2 (Length: 611)
Name: NF14029_low_2
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 37215424 - 37214838
Alignment:
| Q |
18 |
atttgaaattcaaatgcatcttactcaaatcatgtgaatctcaca-aaatttgatataacctatatgaattttaactagtacaagagtgtgtgttgggaa |
116 |
Q |
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| T |
37215424 |
atttgaaattcaaatgcgtcttactcaaatcatgtggatctcacataaatttgatataacctatatgaattttaactagtacaagagtgtgtgttgggaa |
37215325 |
T |
|
| Q |
117 |
gagcatttctaaattaaatttatatggttataggcctaccatgtaatacatcatgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37215324 |
gagcatttctaaattaaatttatatggttataggcctaccgtgtaatacatcatgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtc |
37215225 |
T |
|
| Q |
217 |
tgcttctagacgatatcccgtcaactctacaaaattgtcatgcttgagtcttgaaacaactgataactgcaaaatccatatagtaacatgataaaatatg |
316 |
Q |
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| T |
37215224 |
tgcttctagacaatatcccgtcaactctacaaaattgtcatgcttgagtcttgaaacaactgataactgcaaaatccatatagtaacatgataaaatatg |
37215125 |
T |
|
| Q |
317 |
agtgacaacacaaagagccaaatcattgctttaaatannnnnnncttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccag |
416 |
Q |
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| T |
37215124 |
agtgacaacaccaagagccaaatcattgctttaaataattttttcttacctgagccgcgaaatcgttggagtcggaatcaggtgaagaacttgtatccag |
37215025 |
T |
|
| Q |
417 |
ccttttgattgcagcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgtt |
516 |
Q |
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| T |
37215024 |
ccttttgattgcagcttcagtaccatcattcatttttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtttcctgtt |
37214925 |
T |
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| Q |
517 |
aatctatttaactcagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctt |
603 |
Q |
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| T |
37214924 |
aatctatttaactcagccaatgatatcgagggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctt |
37214838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 23408668 - 23408553
Alignment:
| Q |
170 |
tgcaaagaacccaaacttgcatattgataaaccaaaattctgttgtctgcttctagacgatatcccgtcaactctacaaaattgtcatgcttgagtcttg |
269 |
Q |
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||||| ||||| | |||||||||||| ||||||||||||||||| | ||| || ||| ||||||| ||||| | ||||| | |||| ||| ||||||| |
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| T |
23408668 |
tgcaacgaaccaagacttgcatattggtaaaccaaaattctgttatttgcctcaagagaatatcccatcaaccccacaaagtgttcattcttcagtcttg |
23408569 |
T |
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| Q |
270 |
aaacaactgataactg |
285 |
Q |
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| T |
23408568 |
aaacaattgctaactg |
23408553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 603
Target Start/End: Complemental strand, 23408274 - 23408217
Alignment:
| Q |
546 |
gggtatctcaattggtaatactttctgtggaccaccactcttggtaatgttgctcctt |
603 |
Q |
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|||| |||||||| |||| ||||||| ||||||||||||||| |||| ||||||||| |
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| T |
23408274 |
gggtgtctcaatttctaatgctttctgcggaccaccactcttgataatattgctcctt |
23408217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 52717148 - 52717091
Alignment:
| Q |
452 |
ttgcatagtaaacccttccatacgaaccttcaccaatgaaggcctttgaaccaaagtt |
509 |
Q |
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||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
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| T |
52717148 |
ttgcataatacaccctcccatacgacccttcaccaatcaatgcctttgatccaaagtt |
52717091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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