View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14029_low_3 (Length: 590)

Name: NF14029_low_3
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14029_low_3
NF14029_low_3
[»] chr5 (6 HSPs)
chr5 (1-308)||(1716441-1716748)
chr5 (141-394)||(3643591-3643843)
chr5 (190-392)||(7524968-7525170)
chr5 (194-298)||(4103249-4103352)
chr5 (192-387)||(16037861-16038053)
chr5 (197-257)||(19261156-19261216)
[»] chr2 (32 HSPs)
chr2 (134-401)||(9026730-9026997)
chr2 (133-401)||(8973255-8973523)
chr2 (115-401)||(9020771-9021058)
chr2 (187-401)||(9008018-9008232)
chr2 (134-401)||(9016437-9016704)
chr2 (6-307)||(2841008-2841313)
chr2 (134-354)||(9030342-9030557)
chr2 (115-401)||(8984617-8984900)
chr2 (187-370)||(43850046-43850228)
chr2 (111-302)||(8988375-8988567)
chr2 (134-302)||(8992092-8992260)
chr2 (115-272)||(9023371-9023529)
chr2 (186-401)||(30733984-30734199)
chr2 (192-370)||(19232328-19232504)
chr2 (187-329)||(32918077-32918218)
chr2 (170-263)||(8979302-8979395)
chr2 (111-398)||(30731928-30732216)
chr2 (134-257)||(9031997-9032120)
chr2 (282-373)||(8913027-8913118)
chr2 (197-298)||(10763878-10763978)
chr2 (192-257)||(6471749-6471813)
chr2 (194-257)||(35701893-35701956)
chr2 (458-516)||(8993147-8993205)
chr2 (460-521)||(9018418-9018479)
chr2 (357-401)||(8992299-8992343)
chr2 (458-498)||(9027821-9027861)
chr2 (193-228)||(39814115-39814150)
chr2 (458-500)||(8987384-8987426)
chr2 (243-301)||(8996343-8996401)
chr2 (458-519)||(9018524-9018586)
chr2 (134-219)||(8975639-8975724)
chr2 (294-342)||(9023537-9023585)
[»] chr8 (12 HSPs)
chr8 (2-392)||(41841058-41841451)
chr8 (1-257)||(42220886-42221141)
chr8 (183-370)||(40054305-40054491)
chr8 (187-391)||(44878980-44879183)
chr8 (187-391)||(44880738-44880941)
chr8 (190-343)||(37682057-37682209)
chr8 (186-329)||(10944368-10944510)
chr8 (112-257)||(42555123-42555269)
chr8 (192-276)||(37679757-37679841)
chr8 (115-257)||(42091945-42092087)
chr8 (207-257)||(44582870-44582920)
chr8 (187-233)||(42872514-42872560)
[»] chr4 (14 HSPs)
chr4 (114-392)||(11652298-11652576)
chr4 (6-398)||(3461042-3461435)
chr4 (181-341)||(50077156-50077315)
chr4 (182-401)||(49106425-49106644)
chr4 (157-391)||(49108539-49108773)
chr4 (191-394)||(26984572-26984773)
chr4 (191-298)||(26998740-26998846)
chr4 (218-390)||(21503706-21503877)
chr4 (191-252)||(48205832-48205893)
chr4 (32-78)||(11652615-11652661)
chr4 (197-250)||(6431957-6432010)
chr4 (192-257)||(41013586-41013651)
chr4 (197-236)||(26982549-26982588)
chr4 (195-231)||(34481155-34481191)
[»] chr1 (20 HSPs)
chr1 (115-401)||(33987994-33988280)
chr1 (190-401)||(14652525-14652736)
chr1 (190-401)||(14662316-14662527)
chr1 (187-401)||(38175426-38175640)
chr1 (179-329)||(14654309-14654458)
chr1 (179-329)||(14664100-14664249)
chr1 (179-398)||(14708567-14708786)
chr1 (181-398)||(28366098-28366315)
chr1 (111-309)||(14669698-14669896)
chr1 (187-329)||(14674478-14674619)
chr1 (179-309)||(14706077-14706206)
chr1 (173-398)||(14716274-14716499)
chr1 (187-329)||(14679856-14679997)
chr1 (187-329)||(14681596-14681737)
chr1 (187-309)||(14683747-14683868)
chr1 (193-370)||(11872408-11872585)
chr1 (187-271)||(14676629-14676713)
chr1 (186-297)||(14667112-14667222)
chr1 (196-257)||(37422175-37422236)
chr1 (187-257)||(28698550-28698620)
[»] chr6 (5 HSPs)
chr6 (181-392)||(10795795-10796006)
chr6 (181-398)||(10791551-10791768)
chr6 (190-370)||(30521242-30521421)
chr6 (192-257)||(8875691-8875756)
chr6 (197-297)||(21216032-21216131)
[»] chr7 (2 HSPs)
chr7 (190-371)||(27134511-27134691)
chr7 (196-271)||(8128149-8128224)
[»] chr3 (1 HSPs)
chr3 (192-238)||(15758562-15758608)
[»] scaffold0549 (1 HSPs)
scaffold0549 (282-351)||(5487-5556)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 1716748 - 1716441
Alignment:
Q  1 gcatgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1716748 gcatgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtccc 1716649  T
Q  101 aggcgattgcaaatagtcccacatcgctagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttc 200  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1716648 aggctattgcaaatagtcccacatcgctagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttc 1716549  T
Q  201 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg-cccaatgggccacaacagtattaaattacttttttg 299  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| || |||||| ||| ||  |||||||||||||||||     
T  1716548 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcac-acgatattaaattactttttta 1716450  T
Q  300 aggaggaga 308  Q
    ||| |||||    
T  1716449 agggggaga 1716441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 141 - 394
Target Start/End: Original strand, 3643591 - 3643843
Alignment:
Q  141 aagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 240  Q
    ||||||||||||||| |||||||||  |||||||||     |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3643591 aagtgagtggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 3643690  T
Q  241 tcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctc 340  Q
    |||||||||||| ||||  |||||||| |||| ||| ||  ||||||||||||||||| ||| ||||| || ||  ||||||||||||||||||||||||    
T  3643691 tcagtttaatatctgatatgtggcccattgggtcac-acgatattaaattacttttttaagggggagaaactatcacaatagcttgctattgggtttctc 3643789  T
Q  341 aagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattca 394  Q
     || || || ||||  |||||||||||||| || ||| ||||||||||||||||    
T  3643790 gagtgttgcttatgtgttgcactattgcattggctggcgcaccccaccaattca 3643843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 190 - 392
Target Start/End: Original strand, 7524968 - 7525170
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||  ||| ||  ||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcac-acgatattaaat 7525066  T
Q  290 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtgcaccccacc 388  Q
    ||||||||||||| |||||| ||   | | |||||||||  ||||||||||| | |||| | |||  ||||||||||||||||| | || ||||||||||    
T  7525067 tacttttttgagggggagaggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcatgggctaggcgcaccccacc 7525166  T
Q  389 aatt 392  Q
    ||||    
T  7525167 aatt 7525170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 4103249 - 4103352
Alignment:
Q  194 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattact 293  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||| ||||  |||||||||| | |||| ||  ||||||||| ||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccac-acgatattaaattgct 4103347  T
Q  294 ttttt 298  Q
    |||||    
T  4103348 ttttt 4103352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 387
Target Start/End: Original strand, 16037861 - 16038053
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 291  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||||||| |||||| | |||||| || |||  ||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttga-tagtggtctaatgggtca-aacgatattaaatta 16037957  T
Q  292 cttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccac 387  Q
    ||||||||| | | | |   |||  ||| ||||||||| |||| |||||  | ||||| ||||  |||||||||||||| || ||| |||||||||    
T  16037958 cttttttgaagggaaaaagtcatcacaagagcttgctaatgggcttctcgtgtgtcgcttatgtgttgcactattgcatcggttggcgcaccccac 16038053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 19261216 - 19261156
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||| ||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgat 19261156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 134 - 401
Target Start/End: Original strand, 9026730 - 9026997
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||||||||||  |||||||  ||||||||  | |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9026730 agaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 9026829  T
Q  234 gttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgg 333  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  9026830 gttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagtgggagagaccatttcaatagcttgctattgg 9026929  T
Q  334 gtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    |||||||||| |||||||||| ||||||||||||||| || |||  |||||| |||||||||||||||    
T  9026930 gtttctcaagtgtcgcctatgctttgcactattgcattggctggcacacccctccaattcaagttcaa 9026997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 133 - 401
Target Start/End: Original strand, 8973255 - 8973523
Alignment:
Q  133 cagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatc 232  Q
    ||||||| ||||||  |||||||| ||||||||  | |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8973255 cagaaagtaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatc 8973354  T
Q  233 tgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattg 332  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||| |||    
T  8973355 tgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaattacttttttaagggggagagaccatttcaatagcttgctgttg 8973454  T
Q  333 ggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    ||||||||||| || || ||||  ||||||||||||||| | ||| || ||||||||||||||||||||    
T  8973455 ggtttctcaagtgttgcatatgcgttgcactattgcatgagctggcgcgccccaccaattcaagttcaa 8973523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 115 - 401
Target Start/End: Original strand, 9020771 - 9021058
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    ||||| |||||| | ||||| |||||||||||| ||||||||| ||||||||  | |||||||| ||||||| || |||||| |||||||||||||||||    
T  9020771 agtcctacatcggttgttcatgaaagcaagtgaatggatgtgatatataaaaccataagcgagttcatctttcaattcatacatttctcggccttttggc 9020870  T
Q  214 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacca 313  Q
    |||||||||||||||||||||||||||||| |||||||| |||   ||||||||||||| ||| |||||||||||||||||||||||||  ||||| |||    
T  9020871 taagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgagaggcca 9020970  T
Q  314 tttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    |||||||| |||||||||||| |||||||| ||| ||||||  |||||||||||||| || |||||||||||||||||||||||||||    
T  9020971 tttcaataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggttggtgcaccccaccaattcaagttcaa 9021058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 187 - 401
Target Start/End: Original strand, 9008018 - 9008232
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||    
T  9008018 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtatta 9008117  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcacccca 386  Q
    |||||||||||||||| |||||| ||||||||||| |||| |||||||||||||||| |||||||||| |||||||||||||||  | |||  |||||||    
T  9008118 aattacttttttgagggggagaggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcgctggcacacccca 9008217  T
Q  387 ccaattcaagttcaa 401  Q
    ||||||| |||||||    
T  9008218 ccaattctagttcaa 9008232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 134 - 401
Target Start/End: Original strand, 9016437 - 9016704
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||||||||||  |||||||| ||||||||  | |||||||| ||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||    
T  9016437 agaaagcaagtgaaaggatgtgatatataaaagcataagcgagttcatcttttaactcataccttattcgaccttttggctaagatcaaatgtagtatct 9016536  T
Q  234 gttcttatcagt---ttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctat 330  Q
    ||||||||||||   ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  9016537 gttcttatcagtagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagggggagagacaatttcaatagcttgctat 9016636  T
Q  331 tgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    ||| |||||   | || || ||||  || ||||||| ||| || ||||| |||||||||||||||||||||    
T  9016637 tggatttct---gtgttgcttatgtgttacactattacattggttggtgaaccccaccaattcaagttcaa 9016704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 6 - 307
Target Start/End: Complemental strand, 2841313 - 2841008
Alignment:
Q  6 agatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgccaggcg 105  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||  ||||||| || || ||| ||| |      
T  2841313 agatttgtccttgttggaagctcaaatcacgcatcctttgcttggaaattggtctttgttggccatgccatgcg-tacaagaacaggcgagtcccaagtt 2841215  T
Q  106 attgcaaa----tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaa--ctcatacctt 198  Q
    ||||   |    ||||||||||||| | ||| | |||||||||||||||||||||||||||||||  ||| |||||  | | ||||||  ||||||||||    
T  2841214 attgtttaagtttagtcccacatcggttgttgaagaaagcaagtgagtggatgtgagatataaaagcagacgcgagcccct-ttttaactctcatacctt 2841116  T
Q  199 tctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttttt 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||  ||||||  ||| ||  |||||||||||||||||    
T  2841115 tctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcac-acgatattaaattactttttt 2841017  T
Q  299 gaggaggag 307  Q
    |||| ||||    
T  2841016 gagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 134 - 354
Target Start/End: Original strand, 9030342 - 9030557
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||| ||||||||  |||||||| ||||||||  | |||| ||| ||||||| ||||||||  ||||| |||||||||||||||||||||||||||||||    
T  9030342 agaatgcaagtgaagggatgtgatatataaaagcataagcaagttcatctttcaactcatatttttcttggccttttggctaagatcaagtgtagtatct 9030441  T
Q  234 gttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgg 333  Q
    |||||||||| ||||||||||||  |||||| ||||||| ||| ||||||||||||||||||||||||| ||||||     |||||||||||||||||||    
T  9030442 gttcttatcaatttaatatttgagaagtggctcaatgggtcac-acagtattaaattacttttttgagggggagag----gttcaatagcttgctattgg 9030536  T
Q  334 gtttctcaagcgtcgcctatg 354  Q
    | |||||||| ||||||||||    
T  9030537 gcttctcaagtgtcgcctatg 9030557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 115 - 401
Target Start/End: Original strand, 8984617 - 8984900
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| | ||||| |||| |||||||  |||||||| ||||||||  | |||| ||| ||| ||| |||||||||||||||||||||||||||    
T  8984617 agtcccacatcggttgttcaagaaaacaagtgaagggatgtgatatataaaagcataagcaagttcatatttcaactcatacctttctcggccttttggc 8984716  T
Q  214 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacca 313  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |||||  || ||||||| ||||||||||  | |||  |||    
T  8984717 taagatcaagtgtagtatttgttcttattagtttaatatttgattagtggcctaatgggtcacaatggttttaaattgcttttttgagaggtagatgcca 8984816  T
Q  314 tttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    |||||||||||||| ||| || || |     || |||| ||  || ||||||||||| || |||  ||||||||||||||||||||||    
T  8984817 tttcaatagcttgcgatttggctttt----tgttgcctctgtgttacactattgcattgggtggcacaccccaccaattcaagttcaa 8984900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 187 - 370
Target Start/End: Original strand, 43850046 - 43850228
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||| | ||||  | |||||    
T  43850046 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatga-tatta 43850144  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 370  Q
    ||| |||||||||||| ||||||  || |||||||||||||||||||  |||| | | ||||||||||  ||||||||||||||    
T  43850145 aatcacttttttgagggggagaggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcat 43850228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 111 - 302
Target Start/End: Original strand, 8988375 - 8988567
Alignment:
Q  111 aaatagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 209  Q
    ||||||||||||||||   ||||| ||||||||||||  |||||||| ||||||||  | |||||||| ||||||| |||| ||||| |||| |||||||    
T  8988375 aaatagtcccacatcgactgttcaagaaagcaagtgaagggatgtgatatataaaagcataagcgagttcatctttcaacttataccattcttggccttt 8988474  T
Q  210 tggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagg 302  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||  | ||||| |||||||||||||||||||||    
T  8988475 tggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgatcagtgactcaatggttctcaacaatattaaattacttttttgagg 8988567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 134 - 302
Target Start/End: Original strand, 8992092 - 8992260
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||| ||||||  |||||||| ||||||||  | |||||||| | ||||||||||||| |||||||| | |||||||||||||||||||||||||| |    
T  8992092 agaaagtaagtgaagggatgtgatatataaaagcataagcgagttcgtcttttaactcatgcctttctcagtcttttggctaagatcaagtgtagtatat 8992191  T
Q  234 gttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgagg 302  Q
    |||||||| |||| ||||| ||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  8992192 gttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattacttttttgagg 8992260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 9023371 - 9023529
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| | ||||| |||| |||||||   ||||||| ||||||||  | |||||||| || |||| |||||||||||||||||||||||||||    
T  9023371 agtcccacatcggttgttcaagaaatcaagtgaagagatgtgatatataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggc 9023470  T
Q  214 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatggg 272  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  9023471 taagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatggg 9023529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 186 - 401
Target Start/End: Original strand, 30733984 - 30734199
Alignment:
Q  186 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatt 285  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||  | ||||    
T  30733984 taacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatga-tatt 30734082  T
Q  286 aaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcaccc 384  Q
    ||||||||||||| ||| |||||  |||||| | |||||||||| | || ||||| || ||||||  ||  ||||||||||||| |||  ||| ||||||    
T  30734083 aaattactttttttagggggagaagccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcaccc 30734182  T
Q  385 caccaattcaagttcaa 401  Q
    ||||||| |||||||||    
T  30734183 caccaatccaagttcaa 30734199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 192 - 370
Target Start/End: Complemental strand, 19232504 - 19232328
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatta 291  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||  ||| |||| |||| ||| ||| ||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcac-acaatattaaatta 19232407  T
Q  292 cttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 370  Q
    | ||||||||| |||||  ||| |||||||||||||||||||| |||||||| ||| | ||||  ||||||||||||||    
T  19232406 cctttttgagggggagaagccacttcaatagcttgctattgggcttctcaagtgtcacttatgcgttgcactattgcat 19232328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 32918077 - 32918218
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||    
T  32918077 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatatta 32918175  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    |||||||||||||||| |||||  ||||| || ||||||||||    
T  32918176 aattacttttttgagggggagaagccattgcagtagcttgcta 32918218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 8979302 - 8979395
Alignment:
Q  170 aagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 263  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979302 aagcaagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtgg 8979395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 111 - 398
Target Start/End: Original strand, 30731928 - 30732216
Alignment:
Q  111 aaatagtcccacatcgc-tagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 209  Q
    ||||||||||||||||  ||||  ||||||||| ||||   ||||  |||||||||  || | ||||  ||||||| |||||||||||||||||||||||    
T  30731928 aaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttt 30732027  T
Q  210 tggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||  ||| ||  ||||||||||||||||||||| || |||    
T  30732028 tggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcac-acgatattaaattacttttttgagggggggag 30732126  T
Q  310 accatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcaccccaccaattcaagtt 398  Q
     ||| ||   |||||||||| | || |||||  | || | | |||  ||||||||| ||| |||  ||||||||||||||||||||||||    
T  30732127 gccactttggtagcttgctactaggcttctcgtgtgttgtcaatgtgttgcactatagcattggtctggtgcaccccaccaattcaagtt 30732216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 9031997 - 9032120
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    |||||||||||||  |||||||  ||||||||  | |||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  9031997 agaaagcaagtgaagggatgtggtatataaaagcataagcgaattcatctttcaactcatacctttctcggccttttggttaagatcaagtgtagtatct 9032096  T
Q  234 gttcttatcagtttaatatttgat 257  Q
    ||||||||||||||||||| ||||    
T  9032097 gttcttatcagtttaatatctgat 9032120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 8913027 - 8913118
Alignment:
Q  282 tattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatggg 373  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||| || ||||   ||||||||||  |||||||||||||||||    
T  8913027 tattaaattacttttttgagggggagagaccatttcagtagcttgctattggtttcctcatttgtcgcctatgcattgcactattgcatggg 8913118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 298
Target Start/End: Complemental strand, 10763978 - 10763878
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttt 296  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| ||||  ||||  |||||| |||  ||| |||||||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtcca-tacaatattaaattactttt 10763880  T
Q  297 tt 298  Q
    ||    
T  10763879 tt 10763878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 6471813 - 6471749
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||| ||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgat 6471749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 35701893 - 35701956
Alignment:
Q  194 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| |||||||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgat 35701956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 458 - 516
Target Start/End: Original strand, 8993147 - 8993205
Alignment:
Q  458 ccattgaaagaatttcaaaatgtctagccttctcacaacttgcaagtgcactaaggagc 516  Q
    ||||||||||||||| | ||||||||||||| |||||||||||  | ||||||||||||    
T  8993147 ccattgaaagaattttataatgtctagccttgtcacaacttgcgcgcgcactaaggagc 8993205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 521
Target Start/End: Original strand, 9018418 - 9018479
Alignment:
Q  460 attgaaagaatttcaaaatgtctagccttctcacaacttgcaagtgcactaaggagctgcgt 521  Q
    ||||||||||||||| ||||||||||||| |||||||||||    |||||||||||| ||||    
T  9018418 attgaaagaatttcataatgtctagccttgtcacaacttgcgctcgcactaaggagcggcgt 9018479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 401
Target Start/End: Original strand, 8992299 - 8992343
Alignment:
Q  357 ttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  8992299 ttgcactattgcatgggctggcgcacccctccaattcaagttcaa 8992343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 498
Target Start/End: Original strand, 9027821 - 9027861
Alignment:
Q  458 ccattgaaagaatttcaaaatgtctagccttctcacaactt 498  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  9027821 ccattgaaagaatttcacaatgtctagccttgtcacaactt 9027861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 228
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  193 tacctttctcggccttttggctaagatcaagtgtag 228  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 500
Target Start/End: Original strand, 8987384 - 8987426
Alignment:
Q  458 ccattgaaagaatttcaaaatgtctagccttctcacaacttgc 500  Q
    ||||||||||||||||| |||||| |||||| |||||||||||    
T  8987384 ccattgaaagaatttcataatgtccagccttatcacaacttgc 8987426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 8996343 - 8996401
Alignment:
Q  243 agtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgag 301  Q
    |||| ||||| |||||||||||||||||   |||||  |||||||||||||||||||||    
T  8996343 agttcaatatatgattagtggcccaatgaatcacaatggtattaaattacttttttgag 8996401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 519
Target Start/End: Original strand, 9018524 - 9018586
Alignment:
Q  458 ccattgaaagaatttcaaaatgtctagccttctcacaacttgca-agtgcactaaggagctgc 519  Q
    |||||||| |||||||| ||||||||||||| |||||||| |||  | |||||||||||||||    
T  9018524 ccattgaaggaatttcagaatgtctagccttgtcacaactcgcatcgcgcactaaggagctgc 9018586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 8975639 - 8975724
Alignment:
Q  134 agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagat 219  Q
    ||||| |||||||  |||||||| ||||||||  | |||||||| || |||| ||||||||  |||||  ||||||||||||||||    
T  8975639 agaaatcaagtgaagggatgtgatatataaaagcataagcgagtccaactttcaactcatatttttctaagccttttggctaagat 8975724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 294 - 342
Target Start/End: Original strand, 9023537 - 9023585
Alignment:
Q  294 tttttgaggaggagagaccatttcaatagcttgctattgggtttctcaa 342  Q
    ||||||||| |||||| |  ||||||||||||||||||||| |||||||    
T  9023537 tttttgagggggagaggctttttcaatagcttgctattgggcttctcaa 9023585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 41841451 - 41841058
Alignment:
Q  2 catgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgcca 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||  ||||||| | |   ||| |||    
T  41841451 catgagatttgtccttgttggaagctcaaatcacgtatcctttgcttggaatttggtctctgttggccatgccatgcg-tacaagaaccattgagtccca 41841353  T
Q  102 ggcgattg-caaa---tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacc 196  Q
     |   ||| | ||   ||||||||||||||| ||| | |||||||||||||||||||||||||||||||  |||||| |   ||||||| ||||||||||    
T  41841352 agttgttgtctaagtttagtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacc 41841253  T
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||| ||| ||  |||||||||||||||    
T  41841252 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcac-acgatattaaattactttt 41841154  T
Q  297 ttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaatt 392  Q
    |||| | |||||  |||   |||||||||||||||||| ||||| || ||||||||||  ||||||||||||||||| ||| |||||||| |||||    
T  41841153 ttgatggggagaagccaccccaatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgcatgggctggcgcaccccatcaatt 41841058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 42221141 - 42220886
Alignment:
Q  1 gcatgagatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgcc 100  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||    
T  42221141 gcatgagatttgtccttgttggaagctcaaatcatatatcctttgtttggaaattggtctttgttggccatgtcatgccatacaagaacaagctagtccc 42221042  T
Q  101 aggcgattgcaaatagtcccacatcgctagttc-agaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcataccttt 199  Q
    | || |||||||||||||||||||||||||||| |||||| ||||| |||||| ||||||||||||  ||| |||||   | |||| ||||||||| |||    
T  42221041 aagctattgcaaatagtcccacatcgctagttctagaaagtaagtg-gtggatatgagatataaaagcagaggcgagcatagctttcaactcatacattt 42220943  T
Q  200 ctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
     |||| |||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  42220942 ttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctgat 42220886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 183 - 370
Target Start/End: Original strand, 40054305 - 40054491
Alignment:
Q  183 ttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagt 282  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||  ||  |    
T  40054305 ttttaattcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtca-tacgat 40054403  T
Q  283 attaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 370  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||||||||| |||| ||| ||||| ||||  ||||||||||||||    
T  40054404 attaaattacttttttgagggggagaggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcat 40054491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 187 - 391
Target Start/End: Original strand, 44878980 - 44879183
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||| ||||  | |||||    
T  44878980 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatga-tatta 44879078  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcacccca 386  Q
    |||||||||||||||| |||||   |||  ||||||||||||||||   ||||  || ||||| ||||  |||||||||||||| || ||| ||||||||    
T  44879079 aattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgcgttgcactattgcataggctggcgcacccca 44879178  T
Q  387 ccaat 391  Q
    |||||    
T  44879179 ccaat 44879183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 187 - 391
Target Start/End: Complemental strand, 44880941 - 44880738
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||||| ||||  | |||||    
T  44880941 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatga-tatta 44880843  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcacccca 386  Q
    |||||||||||||||| |||||   |||  ||||||||||||||||   ||||  || ||||| ||||  |||||||||||||| || ||| ||||||||    
T  44880842 aattacttttttgagggggagaagtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgcgttgcactattgcataggctggcgcacccca 44880743  T
Q  387 ccaat 391  Q
    |||||    
T  44880742 ccaat 44880738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 190 - 343
Target Start/End: Original strand, 37682057 - 37682209
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 289  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccac-acgatattaaat 37682155  T
Q  290 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaag 343  Q
    |  |||||| |||| ||||| |||    |||||||||||||| ||| |||||||    
T  37682156 ttgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaag 37682209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 186 - 329
Target Start/End: Complemental strand, 10944510 - 10944368
Alignment:
Q  186 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatt 285  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| | |||||  ||| ||  ||||    
T  10944510 taactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcac-acgatatt 10944412  T
Q  286 aaattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    ||||||||||||||| | |||||  |||||| | ||||||||||    
T  10944411 aaattacttttttgatggggagaagccattttagtagcttgcta 10944368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 112 - 257
Target Start/End: Complemental strand, 42555269 - 42555123
Alignment:
Q  112 aatagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggcctttt 210  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||   ||||  ||  || |||| ||||||||||||||| |  |||||    
T  42555269 aatagtcccacatcgatagtttaagaaagcaagtgagtggatgtgatatataaaacctgaaggtagctcaactttcaactcatacctttcttgatctttt 42555170  T
Q  211 ggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    ||||||||||||||| || ||||||| ||||||||||||||||||||    
T  42555169 ggctaagatcaagtgcagaatctgtttttatcagtttaatatttgat 42555123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 192 - 276
Target Start/End: Original strand, 37679757 - 37679841
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccac 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| ||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccac 37679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 115 - 257
Target Start/End: Original strand, 42091945 - 42092087
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| ||||||| |||||||| ||||||||  ||||||||||||  |||||| |   ||||||| |||||||||||||||  ||||||| ||    
T  42091945 agtcccacatcggtagttcaagaaagcaactgagtggacctgagatataaaaccagaagcaaactcatctttaaactcatacctttctttgcctttt-gc 42092043  T
Q  214 taagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    ||| || ||||||| ||| |||||||||||||||||||| ||||    
T  42092044 taaaattaagtgtaatatttgttcttatcagtttaatatctgat 42092087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 44582870 - 44582920
Alignment:
Q  207 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 44582920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 42872560 - 42872514
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatct 233  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872560 aactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 114 - 392
Target Start/End: Complemental strand, 11652576 - 11652298
Alignment:
Q  114 tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttgg 212  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||||||  |||||| |   ||||||||||||||||||||||||||||||||||    
T  11652576 tagtcccacatcgctcgtttaagaaagcaagtgagtggatgtgagatataaaaccagaagccaacccatcttttaactcatacctttctcggccttttgg 11652477  T
Q  213 ctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacc 312  Q
    |||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||| ||| ||  |||||||||| |||||||||| |||||  ||    
T  11652476 ctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcac-acgatattaaattatttttttgagggggagaagcc 11652378  T
Q  313 atttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaatt 392  Q
    | | |||||||||||||||||| ||||  || ||||||||||  ||||||||||||||||| ||| ||||||||||||||    
T  11652377 actccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgcatgggctggcgcaccccaccaatt 11652298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 6 - 398
Target Start/End: Complemental strand, 3461435 - 3461042
Alignment:
Q  6 agatttgtccttgttggaagctcaaatcacgtatcctttgtttggaaattggtctttgttggccatgccatgccatacaagagcaagctagtgccaggcg 105  Q
    ||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| ||||||| |||||||||  | ||||| | ||  ||| ||| |      
T  3461435 agatttgtccttgttggaagctcaaatcatgtatcctttgcttgaaagttggtctctgttggctatgccatgcg-tgcaagaactag--agtcccaagtt 3461339  T
Q  106 attg-caaa---tagtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttc 200  Q
     ||| | ||   ||||||||||||||| ||  | ||||||||||||||||||| |||||||||||  | |||||||    ||||| || |||||||||||    
T  3461338 gttgtctaagtttagtcccacatcgcttgtggaagaaagcaagtgagtggatgggagatataaaaccataagcgagcatctctttcaattcatacctttc 3461239  T
Q  201 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| | ||||||| ||| ||  ||||||||||||||||| |    
T  3461238 tcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcac-acgatattaaattacttttttaa 3461140  T
Q  301 ggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagtt 398  Q
    || |||||  |||||||||||||||||||||||||||||| || |||| |||||  |||||||||||||| || |||  |||||||||||| ||||||    
T  3461139 gggggagaagccatttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcataggctggcacaccccaccaatacaagtt 3461042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 181 - 341
Target Start/End: Complemental strand, 50077315 - 50077156
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||  ||||  |    
T  50077315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatga 50077216  T
Q  281 gtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctca 341  Q
     ||||||||||||||||||||| |||||  ||| |||||||||||||||||||| ||||||    
T  50077215 -tattaaattacttttttgagggggagaagccacttcaatagcttgctattgggcttctca 50077156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 182 - 401
Target Start/End: Complemental strand, 49106644 - 49106425
Alignment:
Q  182 cttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacag 281  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||      
T  49106644 ctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcac-acga 49106546  T
Q  282 tattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtgc 380  Q
    ||||||||||||||||||||| |||||   ||  | | |||||||||| ||| ||||| | | |||||  |||  ||||||||||||||| | | || ||    
T  49106545 tattaaattacttttttgagggggagaagtcaccttagtagcttgctactggatttcttatgtgtcgctcatgtgttgcactattgcatgagctaggcgc 49106446  T
Q  381 accccaccaattcaagttcaa 401  Q
    ||||||||||||| |||||||    
T  49106445 accccaccaattctagttcaa 49106425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 157 - 391
Target Start/End: Complemental strand, 49108773 - 49108539
Alignment:
Q  157 gatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttga 256  Q
    |||||||||| |||||| ||   || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  49108773 gatataaaatcagaagccagcctatatttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 49108674  T
Q  257 ttagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgat 356  Q
    |  ||| | ||||||| ||| ||  ||||||||||||||||||||| |||||   |||  || ||||||||||||||  |||| | | |||||  |||      
T  49108673 tatgtgactcaatgggtcac-acgatattaaattacttttttgagggggagaagtcatcacagtagcttgctattggacttcttatgtgtcgctcatgtg 49108575  T
Q  357 ttgcactattgcatgggat-ggtgcaccccaccaat 391  Q
    ||||||||||||||| | | || |||||||||||||    
T  49108574 ttgcactattgcatgagctaggcgcaccccaccaat 49108539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 191 - 394
Target Start/End: Complemental strand, 26984773 - 26984572
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaatt 26984675  T
Q  291 acttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaa 390  Q
    |||||||  |||  ||||| |    | | |||||||||  | ||  ||||||| ||||||| ||  ||||||||||||||||| ||| ||| ||||||||    
T  26984674 actttttaaagggagagagtctgcct-agtagcttgctgcttgggctctcaagtgtcgcctttgcgttgcactattgcatgggctggcgcatcccaccaa 26984576  T
Q  391 ttca 394  Q
    ||||    
T  26984575 ttca 26984572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 191 - 298
Target Start/End: Complemental strand, 26998846 - 26998740
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaatt 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  |||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaatt 26998748  T
Q  291 actttttt 298  Q
    ||||||||    
T  26998747 actttttt 26998740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 218 - 390
Target Start/End: Original strand, 21503706 - 21503877
Alignment:
Q  218 atcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagaccatttc 317  Q
    ||||||||||||||||||||||||||||||||||| ||||  ||||| |||| || ||| ||  |||||||||| |||||||||| |||||   |||  |    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcac-acgatattaaattatttttttgagggggagaagtcatcac 21503804  T
Q  318 aatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaa 390  Q
    |||||||||||||||   |||||||| ||||| ||||  |||||||||||||| || ||| ||||||||||||    
T  21503805 aatagcttgctattgaacttctcaagtgtcgcttatgcgttgcactattgcataggctggcgcaccccaccaa 21503877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 48205832 - 48205893
Alignment:
Q  191 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatat 252  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | ||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatat 48205893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 11652661 - 11652615
Alignment:
Q  32 tcacgtatcctttgtttggaaattggtctttgttggccatgccatgc 78  Q
    |||||||||||||| |||||||||||||| ||||||| |||||||||    
T  11652661 tcacgtatcctttgcttggaaattggtctctgttggctatgccatgc 11652615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 250  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 41013651 - 41013586
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| ||||||||| ||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgat 41013586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 26982549 - 26982588
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgtt 236  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctgtt 26982588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  195 cctttctcggccttttggctaagatcaagtgtagtat 231  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 115 - 401
Target Start/End: Original strand, 33987994 - 33988280
Alignment:
Q  115 agtcccacatcgctagttca-gaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttttggc 213  Q
    |||||||||||| | ||||| ||||||||||||  ||| |||| ||||||||  | ||| |||| ||||||| |||||||||||||||||||||||||||    
T  33987994 agtcccacatcggttgttcaagaaagcaagtgaagggaggtgatatataaaagcataagtgagtccatctttcaactcatacctttctcggccttttggc 33988093  T
Q  214 taagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagagacca 313  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  ||||| ||||| | ||| ||  ||||||||||||||||| ||| |||||| |||    
T  33988094 taagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcac-acgatattaaattacttttttaagggggagaggcca 33988192  T
Q  314 tttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtgcaccccaccaattcaagttcaa 401  Q
    |||||||||||||||||||||||| ||||| ||||| |||| | ||||||||||||  ||  || |||||||||| ||||||||||||    
T  33988193 tttcaatagcttgctattgggtttttcaagtgtcgcttatgctctgcactattgcaaaggccggcgcaccccaccgattcaagttcaa 33988280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 190 - 401
Target Start/End: Original strand, 14652525 - 14652736
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaat 14652623  T
Q  290 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcaccccacc 388  Q
    ||||||||||||| |||||  |||||| | |||||||||| | || ||||| || ||  || |||  ||||||||| ||| |||  ||| ||||||||||    
T  14652624 tacttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacc 14652723  T
Q  389 aattcaagttcaa 401  Q
    |||||||||||||    
T  14652724 aattcaagttcaa 14652736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 190 - 401
Target Start/End: Original strand, 14662316 - 14662527
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| ||||||| |||| ||  ||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccac-acgatattaaat 14662414  T
Q  290 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatggtgcaccccacc 388  Q
    ||||||||||||| |||||  |||||| | |||||||||| | || ||||| || ||  || |||  ||||||||| ||| |||  ||| ||||||||||    
T  14662415 tacttttttgagggggagaagccattttagtagcttgctactaggcttctcgagtgtttccaatgcgttgcactatagcattggcgtggcgcaccccacc 14662514  T
Q  389 aattcaagttcaa 401  Q
    |||||||||||||    
T  14662515 aattcaagttcaa 14662527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 187 - 401
Target Start/End: Complemental strand, 38175640 - 38175426
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||| ||| ||  |||||    
T  38175640 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcac-acgatatta 38175542  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat-gggatggtgcacccc 385  Q
    |||||||||||||||| ||||| ||||  ||| |||||||||  ||||||| ||| | ||||| ||||  |||||||||| |||  |  ||| |||||||    
T  38175541 aattacttttttgagggggagaaaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcacccc 38175442  T
Q  386 accaattcaagttcaa 401  Q
    |||||||| |||||||    
T  38175441 accaattctagttcaa 38175426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 14654458 - 14654309
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14654458 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14654360  T
Q  279 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    |  ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  14654359 cgatattaaattacttttttgagggggagaggccacttcagtagcttgcta 14654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 179 - 329
Target Start/End: Complemental strand, 14664249 - 14664100
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14664249 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14664151  T
Q  279 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    |  ||||||||||||||||||||| |||||| ||| |||| ||||||||||    
T  14664150 cgatattaaattacttttttgagggggagaggccacttcagtagcttgcta 14664100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 179 - 398
Target Start/End: Original strand, 14708567 - 14708786
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14708567 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14708665  T
Q  279 cagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tgggatgg 377  Q
    |  ||||||||||||||||||||| ||||||  || || | |||||||||||| || |||||  | |||| | |||  ||||||||  ||| |||  |||    
T  14708666 cgatattaaattacttttttgagggggagaggtcactttagtagcttgctattaggcttctcttgtgtcgtcaatgtgttgcactacagcattggcctgg 14708765  T
Q  378 tgcaccccaccaattcaagtt 398  Q
     ||||||||||||||||||||    
T  14708766 cgcaccccaccaattcaagtt 14708786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 181 - 398
Target Start/End: Complemental strand, 28366315 - 28366098
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtg-gcccaatgggccacaac 279  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  ||||||||| ||| ||    
T  28366315 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcac-ac 28366217  T
Q  280 agtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggatggtg 379  Q
      ||||||||||||||||| ||| |||||||| |||  | |||||||||| | ||| | ||| | ||||  ||||  |||||||||||||| || ||| |    
T  28366216 gatattaaattacttttttaagggggagagactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcattggctggcg 28366117  T
Q  380 caccccaccaattcaagtt 398  Q
    || |||||||||| |||||    
T  28366116 catcccaccaattaaagtt 28366098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 111 - 309
Target Start/End: Complemental strand, 14669896 - 14669698
Alignment:
Q  111 aaatagtcccacatcgc-tagttcagaaagcaagtgagtggatgtgagatataaaataagaagcgagtgcatcttttaactcatacctttctcggccttt 209  Q
    ||||||||||||||||  ||||  ||||||||| ||||   ||||  |||||||||  || | ||||  ||||||| |||||||||||||||||||||||    
T  14669896 aaatagtcccacatcgagtagtcaagaaagcaactgagaacatgtctgatataaaagcagcaacgagcccatctttcaactcatacctttctcggccttt 14669797  T
Q  210 tggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattacttttttgaggaggagag 309  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  ||||||||||||||||||||| ||||||    
T  14669796 tggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatattaaattacttttttgagggggagag 14669698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 14674478 - 14674619
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||  | |||||    
T  14674478 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatga-tatta 14674576  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    |||||||||||||||| |||||  |||||| | ||||||||||    
T  14674577 aattacttttttgagggggagaagccattttagtagcttgcta 14674619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 179 - 309
Target Start/End: Original strand, 14706077 - 14706206
Alignment:
Q  179 catcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaa 278  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| |    
T  14706077 catctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-a 14706175  T
Q  279 cagtattaaattacttttttgaggaggagag 309  Q
    |  ||||||||||||||||||||| ||||||    
T  14706176 cgatattaaattacttttttgagggggagag 14706206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 173 - 398
Target Start/End: Original strand, 14716274 - 14716499
Alignment:
Q  173 cgagtgcatcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatggg 272  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||| |||||||     
T  14716274 cgagttcatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggt 14716373  T
Q  273 ccacaacagtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgca-tg 371  Q
     ||| ||  ||||||||||||||||||||| |||||| | | || | |||||||||| |     ||||  | |||||| |||  ||||||||| ||| ||    
T  14716374 tcac-acgatattaaattacttttttgagggggagaggcaactttagtagcttgctactaatcctctcgtgtgtcgccaatgtgttgcactatagcattg 14716472  T
Q  372 ggatggtgcaccccaccaattcaagtt 398  Q
    |  ||||||||||||||||||||||||    
T  14716473 gcttggtgcaccccaccaattcaagtt 14716499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 14679856 - 14679997
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||||  | |||||    
T  14679856 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatga-tatta 14679954  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    |||||||||||||||| |||||  |||| | | ||||||||||    
T  14679955 aattacttttttgagggggagaagccatattagtagcttgcta 14679997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 14681596 - 14681737
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  |||||    
T  14681596 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatatta 14681694  T
Q  287 aattacttttttgaggaggagagaccatttcaatagcttgcta 329  Q
    |||||||||||||||| |||||  |||||| | ||||||||||    
T  14681695 aattacttttttgagggggagaagccattttagtagcttgcta 14681737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 14683747 - 14683868
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||  ||| ||  |||||    
T  14683747 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcac-acgatatta 14683845  T
Q  287 aattacttttttgaggaggagag 309  Q
    |||||||||||||||| ||||||    
T  14683846 aattacttttttgagggggagag 14683868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 193 - 370
Target Start/End: Complemental strand, 11872585 - 11872408
Alignment:
Q  193 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattac 292  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||  ||||  ||||||| ||| ||  |||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcac-acgatattaaattac 11872487  T
Q  293 -ttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 370  Q
     |||||| ||| |||||| ||||||| |||||||||||||| | || ||||| || || ||||  |||||||| |||||    
T  11872486 tttttttaagggggagaggccatttcgatagcttgctattgagcttttcaagtgtagcttatgtgttgcactactgcat 11872408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 187 - 271
Target Start/End: Original strand, 14676629 - 14676713
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgg 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| |||||||    
T  14676629 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatgg 14676713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 14667222 - 14667112
Alignment:
Q  186 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtatt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||  |||| |||||||  ||||  | ||||    
T  14667222 taactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatga-tatt 14667124  T
Q  286 aaattacttttt 297  Q
    ||||||||||||    
T  14667123 aaattacttttt 14667112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 37422175 - 37422236
Alignment:
Q  196 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgat 37422236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 28698550 - 28698620
Alignment:
Q  187 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||| |||||||||||||    
T  28698550 aactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgat 28698620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 181 - 392
Target Start/End: Complemental strand, 10796006 - 10795795
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||| ||||||||| ||| ||     
T  10796006 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcac-acg 10795908  T
Q  281 gtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtg 379  Q
     ||||||||||||||||||||| |||||  ||| ||||||||||||||||| || |||||| | ||||| | ||  ||||||||||||||| | | |||     
T  10795907 atattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgcttgtgcgttgcactattgcatgagttaggta 10795808  T
Q  380 caccccaccaatt 392  Q
    |||||||||||||    
T  10795807 caccccaccaatt 10795795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 181 - 398
Target Start/End: Complemental strand, 10791768 - 10791551
Alignment:
Q  181 tcttttaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaaca 280  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||  |||||||| ||||  |    
T  10791768 tctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatga 10791669  T
Q  281 gtattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatgggat-ggtg 379  Q
     ||||||||||||||||||||| |||||  ||| ||||||||||||||||| || |||||| | |||||   ||  ||||||||||||||| | | |||     
T  10791668 -tattaaattacttttttgagggggagaagccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcatgagttaggta 10791570  T
Q  380 caccccaccaattcaagtt 398  Q
    |||||||||||||| ||||    
T  10791569 caccccaccaattctagtt 10791551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 190 - 370
Target Start/End: Original strand, 30521242 - 30521421
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 289  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||  |||| |||  |   ||| ||  |||| |||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcac-acgatattcaat 30521340  T
Q  290 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcat 370  Q
    |  |||||||||| |||||| ||| | | ||||||||||||||||| ||||||| |||| || || |||||||||||||||    
T  30521341 ttattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcat 30521421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 192 - 257
Target Start/End: Original strand, 8875691 - 8875756
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 257  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgat 8875756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 21216032 - 21216131
Alignment:
Q  197 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaattactttt 296  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||||||||||| | ||  ||||| |||||   ||||| | |||||||||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtggctcaatgaatcacaa-aatattaaattactttt 21216130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 371
Target Start/End: Original strand, 27134511 - 27134691
Alignment:
Q  190 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgggccacaacagtattaaat 289  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  ||||||||| ||||  |||| | |||| | || |||  ||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtca-aacgatattaaat 27134609  T
Q  290 tacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcctatgatttgcactattgcatg 371  Q
    ||||||||||||| |||||   ||  ||||||| ||||| ||||| |||||| | |||||  |||  |||||||||||||||    
T  27134610 tacttttttgagggggagaagacacctcaatagtttgctgttgggcttctcatgtgtcgctcatgcgttgcactattgcatg 27134691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 271
Target Start/End: Original strand, 8128149 - 8128224
Alignment:
Q  196 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgattagtggcccaatgg 271  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| ||||  |||| |||||||    
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg 8128224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  192 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 238  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 5487 - 5556
Alignment:
Q  282 tattaaattacttttttgaggaggagagaccatttcaatagcttgctattgggtttctcaagcgtcgcct 351  Q
    |||||||||  |||||||||| |||||| |||   ||||||||||||||||||| ||||||| |||||||    
T  5487 tattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctcaagtgtcgcct 5556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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