View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_low_4 (Length: 567)
Name: NF14029_low_4
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 20 - 567
Target Start/End: Original strand, 48123431 - 48123978
Alignment:
| Q |
20 |
ggtgatatatgattggatgcagttgtaaaaaatatttaacacgttcggtgatagttaagtcattctgtcataatgatccaattgcttatgcatttttggc |
119 |
Q |
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| T |
48123431 |
ggtgatatatgattggatgcagttgtaaaaaatatttaacacgttcggtgatagttaagttattctgtcataatgatccaattgcttatgcatttttggc |
48123530 |
T |
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| Q |
120 |
agcatattaaatttcatggcctaattttgttatcttaattaccttagcatcaaaatggaaccgatcaacgcctttccaattatcaacatcataagcagta |
219 |
Q |
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| T |
48123531 |
agcatattaaatttcatggtctaattttgttatcttaattaccttagcatcaaaatggaaccgatcaacgcctttccaattatcaacatcataagcagta |
48123630 |
T |
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| Q |
220 |
taatgcttacaacagctagaaaccttaagcctatcacctttagcacttgcttcatcaccaacttcttgtagtccacggacataatttacagcatatctag |
319 |
Q |
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| T |
48123631 |
taatgcttacaacagctagaaaccttaagcctatcacctttagcacttgcttcatcaccaacttcttgtagtccacggacataatttacagcatatctag |
48123730 |
T |
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| Q |
320 |
aaacaaccaaaggatcttcccctggagtttcttgtccacgcccccatctcggatcgcgaaaaacattcacattagggctccaaaatgtcaaaccagccag |
419 |
Q |
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| T |
48123731 |
aaacaaccaaaggatcttcccctggagtttcttgtccacgcccccacctcggatcgcgaaaaacattcacattagggctccaaaatgtcaaaccagccag |
48123830 |
T |
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| Q |
420 |
atccacattgtacatagctctagcttcatttgacacaacttgtcccattgtgtaccataatgtttcattaaaactagcagctgatagtatcactgctgga |
519 |
Q |
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| T |
48123831 |
atccacattgtacatagctctagcttcatttgacacaacttgtcccattgtgtaccataatgtttcattaaaactagcagctgatagtatcactgctgga |
48123930 |
T |
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| Q |
520 |
aagctagtagcaccgggtaccctgctatcgaaacgcgtctctgctcct |
567 |
Q |
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| T |
48123931 |
aagctagtagcaccgggtaccctgctatcgaaacgcgtccctggtcct |
48123978 |
T |
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