View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14029_low_7 (Length: 394)
Name: NF14029_low_7
Description: NF14029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14029_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 85 - 344
Target Start/End: Original strand, 37885090 - 37885336
Alignment:
| Q |
85 |
cccaattgaggtactaaaaacgttcatttttatgaaaagataggactaaaaataaaagggtctgtttatatgaaagcattcaatattaaattgcaca--t |
182 |
Q |
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| T |
37885090 |
cccaattgagggactaaaagcgttcatttttatgaaaagataggactaaaaataaaagggtctgtttatatgaaagcattcaatattaaattgcacatgt |
37885189 |
T |
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| Q |
183 |
ttaaaatctctatggaaattcgtgcaataaaaattcaaccttttatatttcgacacttacaaatttaatccttcaataaatatcctttcttatcctctaa |
282 |
Q |
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| T |
37885190 |
ttaaaatgtctatggaaattcgtgaaataaaaattcaacttttcatatttcgacactttca----------------aaatatcctttcttatcctctaa |
37885273 |
T |
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| Q |
283 |
ttctcattatgtactccttctgcaagtgcaacaagg-ccttattatagagtctcgaatttaga |
344 |
Q |
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|||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
37885274 |
ttctcattatgtcctccttgtgcaagtgcaacaaggcccttagtatagagtctcgaatttaga |
37885336 |
T |
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