View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_high_11 (Length: 319)
Name: NF1402_high_11
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 67 - 312
Target Start/End: Original strand, 1355435 - 1355680
Alignment:
| Q |
67 |
gaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctc |
166 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355435 |
gaggaaggaagtagtttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctc |
1355534 |
T |
|
| Q |
167 |
tttacaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtga |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1355535 |
tttacaagtatagggttccttccaattccaacaactaagtagactagtaattttgtatcatgtgtttcccttcttctcataatcaatatatttattgtga |
1355634 |
T |
|
| Q |
267 |
tttttgttttgcaataaaaggttttattttagtttccttcatctca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1355635 |
tttttgttttgcaataaaaggttttattttagtttccttcttctca |
1355680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 1362321 - 1362465
Alignment:
| Q |
67 |
gaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctc |
166 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||||| |
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| T |
1362321 |
gaggaaggaagtagtttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaatatattgatgatctcattgctgctc |
1362420 |
T |
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| Q |
167 |
tttacaagtatagggttccttccaattccaacaactaagtagact |
211 |
Q |
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|||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
1362421 |
tttacaagtataggaatccttccaattccaacaactaggtagact |
1362465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 192
Target Start/End: Original strand, 11532284 - 11532409
Alignment:
| Q |
67 |
gaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctc |
166 |
Q |
| |
|
||||||||||||| | ||| |||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||| ||||| || ||||||| ||||| |
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| T |
11532284 |
gaggaaggaagtacgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattgaagattttattgttgctc |
11532383 |
T |
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| Q |
167 |
tttacaagtatagggttccttccaat |
192 |
Q |
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|| | |||||||| |||| ||||||| |
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| T |
11532384 |
ttcaaaagtatagagttcattccaat |
11532409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 12846952 - 12847066
Alignment:
| Q |
70 |
gaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctcttt |
169 |
Q |
| |
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||||||| || || ||||||||||||||||||| |||| ||| |||||||||||||||| ||||||| |||| ||||| || || |||||||||||| |
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| T |
12846952 |
gaaggaattatttacaggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattgaagatttcattgctgctcttc |
12847051 |
T |
|
| Q |
170 |
acaagtatagggttc |
184 |
Q |
| |
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| ||||||||||||| |
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| T |
12847052 |
aaaagtatagggttc |
12847066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 14589394 - 14589470
Alignment:
| Q |
67 |
gaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
143 |
Q |
| |
|
||||||||||||| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14589394 |
gaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14589470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 14623052 - 14623128
Alignment:
| Q |
67 |
gaggaaggaagtagtttcaggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
143 |
Q |
| |
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||||||||||||| || |||||||||||| ||||| |||| |||||| | |||||||||||| |||||||| |||| |
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| T |
14623052 |
gaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaata |
14623128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 29955013 - 29955088
Alignment:
| Q |
109 |
aaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggttc |
184 |
Q |
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||||||||||||||||||||| |||||||| |||| ||| | || | |||||||||||| | |||||||| |||| |
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| T |
29955013 |
aaggttttcagttcaaaagatcttcacaatgaatacattaaagatgtcattgctgctcttcaaaagtatagagttc |
29955088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 51369465 - 51369360
Alignment:
| Q |
84 |
caggaacaatgcaaaagagttggggaaggttttcagttcaaaagatattcacaatcaatatattgatgactttattgctgctctttacaagtatagggtt |
183 |
Q |
| |
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|||||| ||||| ||||| |||| || ||||||||||||||||| ||||||||||||| ||| | || || || ||||||||| | ||| |||| ||| |
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| T |
51369465 |
caggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaagatttaatcgctgctcttcaaaagcatagagtt |
51369366 |
T |
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| Q |
184 |
ccttcc |
189 |
Q |
| |
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| |||| |
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| T |
51369365 |
cattcc |
51369360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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