View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_high_19 (Length: 270)
Name: NF1402_high_19
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 28187213 - 28187426
Alignment:
| Q |
49 |
agattgttcacatcatctgtaatgagagaaggaataaagtcatatatcaattgattagcttgcaaatcctgcacaacattgttagtagcaaaaatatttt |
148 |
Q |
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| T |
28187213 |
agattgttcacatcttcagtaatgagattaggaatggagtcttctatcagttgattaacctgcaaatcctgcacaacattgttagtaacaaaaatatttt |
28187312 |
T |
|
| Q |
149 |
taaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgagtttggaggtatttttgatttt |
248 |
Q |
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| T |
28187313 |
taaagtggttagtaatgagacttgatatttcctcagggttgtaaaccatatcatcaccattcatgagggtagttacgagtttggaggtgtttttgatttt |
28187412 |
T |
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| Q |
249 |
ggttagtctgtggt |
262 |
Q |
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||||||||| |||| |
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| T |
28187413 |
ggttagtctatggt |
28187426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 14720578 - 14720478
Alignment:
| Q |
163 |
atgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgagtttggaggtat-ttttgattttggttagtctgtgg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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| T |
14720578 |
atgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgagtttggaggtatttttttattttggttagtctatgg |
14720479 |
T |
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| Q |
262 |
t |
262 |
Q |
| |
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| |
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| T |
14720478 |
t |
14720478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 19216890 - 19217038
Alignment:
| Q |
109 |
tgcaaatcctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccat |
208 |
Q |
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| T |
19216890 |
tgcaattcctgcacaacattgttagtggaaaaaatatttttaaagtgatttgtaatgagacttgatatttcctccgggtcagtaaccatgtcatcaccat |
19216989 |
T |
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| Q |
209 |
tcatgagggtagttatgagtttggaggtatttttgattttggttagtct |
257 |
Q |
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|||||||| | | |||||||| || | ||| ||||||||| |||||| |
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| T |
19216990 |
tcatgaggctgttaatgagtttagaagagtttctgattttggatagtct |
19217038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 14720652 - 14720591
Alignment:
| Q |
30 |
agtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcat |
91 |
Q |
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| T |
14720652 |
agtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcat |
14720591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 29 - 262
Target Start/End: Complemental strand, 7573035 - 7572802
Alignment:
| Q |
29 |
aagtaggaagcctggtcaagagattgttcacatcatctgtaatgagagaaggaataaagtcatatatcaattgattagcttgcaaatcctgcacaacatt |
128 |
Q |
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|||||||||| || |||| ||||| || ||||| || ||||||||| |||||| |||| | |||||| |||||| | | |||||||||||||||||| |
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| T |
7573035 |
aagtaggaagtcttgtcagtagattatttacatcttcagtaatgagattaggaatggagtcttctatcaaatgattaacctacaaatcctgcacaacatt |
7572936 |
T |
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| Q |
129 |
gttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgagt |
228 |
Q |
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||||||||||||||||||||| ||||||||||| |||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||||||| ||| |
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| T |
7572935 |
gttagtagcaaaaatatttttgaagtgatttgtaatgagacttgatatttcctcagggtcataaactatatcatcatcattcatgagggtagttatcagt |
7572836 |
T |
|
| Q |
229 |
ttggaggtatttttgattttggttagtctgtggt |
262 |
Q |
| |
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|||||||| |||||||||||||| ||||| |||| |
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| T |
7572835 |
ttggaggtgtttttgattttggtcagtctatggt |
7572802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 22562183 - 22562032
Alignment:
| Q |
109 |
tgcaaatcctgcacaacattgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccat |
208 |
Q |
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||||||| || ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||| |||| || | ||| || ||| | |||||||| |
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| T |
22562183 |
tgcaaattcttcacaacaatgttagtagcaaaaatatttttgaagtgatttgtgatgtgacttgaaatttcctctagatcagtaatcatgttatcaccat |
22562084 |
T |
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| Q |
209 |
tcatgagggtagttatgagtttggaggtatttttgattttggttagtctgtg |
260 |
Q |
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|||||||| || ||||||||||||| || ||||||||||||| |||||||| |
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| T |
22562083 |
tcatgaggctatttatgagtttggatgtgtttttgattttggccagtctgtg |
22562032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 260
Target Start/End: Complemental strand, 10010167 - 10010035
Alignment:
| Q |
128 |
tgttagtagcaaaaatatttttaaagtgatttgtgatgagacttgatatttgatccgggtcataaaccatatcatcaccattcatgagggtagttatgag |
227 |
Q |
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|||||| || ||||||||||||||| |||| ||||||| ||||||||||||| | || ||| ||||||| | ||||||| |||||||| || ||||||| |
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| T |
10010167 |
tgttagaagaaaaaatatttttaaaatgatctgtgatgtgacttgatatttgttgtggatcagaaaccatgttatcaccaatcatgaggctatttatgag |
10010068 |
T |
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| Q |
228 |
tttggaggtatttttgattttggttagtctgtg |
260 |
Q |
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|||||| || ||||||||||||| |||| |||| |
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| T |
10010067 |
tttggaagtgtttttgattttggatagtttgtg |
10010035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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