View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_high_25 (Length: 251)
Name: NF1402_high_25
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_high_25 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 6330093 - 6330336
Alignment:
| Q |
8 |
caccacagaggaaactacctcaccaagattgcaattatatgtaatcatgtcaatcacgaattttttaatcactctccacaacaagttgcaaaatatgatt |
107 |
Q |
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| T |
6330093 |
caccaaagaggaaactacctcgccaagattggaattatatataatcatgtcaatcacgaattttttaatcactctccataacaagttgcaaaatatgatt |
6330192 |
T |
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| Q |
108 |
tctctaaggcataccatggtacaatctccacatcttcgcttgaagtgtatcacatgaaccaattttcttattgtagtatttgatccaatgctcgtctaaa |
207 |
Q |
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| T |
6330193 |
tctctaaggcataccatggtacaatcttcacatcttcgcttgaggtgtatcacatgaaccaattttcttattgtagtatttgatccaatgctcgtctaaa |
6330292 |
T |
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| Q |
208 |
ttgcaaaagagacctccacaccccggagtctcactattcctctt |
251 |
Q |
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| T |
6330293 |
ttgcaaaagagacctccacaccccggagtctcactattcctctt |
6330336 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 47918354 - 47918419
Alignment:
| Q |
126 |
gtacaatctccacatcttcgcttgaagtgtatcacatgaaccaattttcttattgtagtatttgat |
191 |
Q |
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| T |
47918354 |
gtacaatctccacatcttcgcatgaaatgtgtcacaagaatcgatttttttagtgtagtctttgat |
47918419 |
T |
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