View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_high_26 (Length: 251)
Name: NF1402_high_26
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_high_26 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 6330348 - 6330520
Alignment:
| Q |
1 |
caccgttgagtttgatctaatcatacgtcctcggattagttgggggttcactatatttctcaaaataaatatagagacctctattttaagagataaagat |
100 |
Q |
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| T |
6330348 |
caccgttgagtttgatctaatcatacgtcctcagattagttgggggttcactatatttctcaaaataaatatagagacctctattttaagagataaagat |
6330447 |
T |
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| Q |
101 |
agaaaataaataatcggtctcaccatcaagtgggttcctgctgtaaacgaaatgacaaacaatatttaaactt |
173 |
Q |
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| T |
6330448 |
agaaaataaataatcggtctcaccatcaagtaggttcctgctgtaaacgaaatgacaaacaatatttaaactt |
6330520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 6330565 - 6330602
Alignment:
| Q |
185 |
atatcaacattgtgaattaaagagtgatatgacaatgc |
222 |
Q |
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| T |
6330565 |
atatcaacattgtgaattaaagagtgatatgacaatgc |
6330602 |
T |
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