View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_high_28 (Length: 251)

Name: NF1402_high_28
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_high_28
NF1402_high_28
[»] chr5 (13 HSPs)
chr5 (1-223)||(25477662-25477884)
chr5 (18-202)||(25469724-25469908)
chr5 (63-222)||(32660658-32660819)
chr5 (153-215)||(32655772-32655834)
chr5 (99-200)||(32748035-32748139)
chr5 (16-229)||(32651367-32651580)
chr5 (12-120)||(32858860-32858968)
chr5 (144-205)||(32752074-32752135)
chr5 (66-133)||(32763335-32763402)
chr5 (7-225)||(32557405-32557623)
chr5 (66-224)||(32768245-32768405)
chr5 (66-120)||(28475213-28475267)
chr5 (151-193)||(32553070-32553112)
[»] chr7 (4 HSPs)
chr7 (66-228)||(32894973-32895135)
chr7 (70-228)||(37577453-37577611)
chr7 (1-137)||(7969424-7969563)
chr7 (188-225)||(7969623-7969660)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 25477884 - 25477662
Alignment:
Q  1 atggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtcta 100  Q
    |||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25477884 atggtctggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtcta 25477785  T
Q  101 tcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatcaatga 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25477784 tcgtgtctgaactcttaaccctcaaggggatcaccttactttccatggtctttatgaatattagcatctgcaccgcaattgccaacacattaatcaatga 25477685  T
Q  201 taaaagcaacagaaagaaaacaa 223  Q
    |||||||||||||||||||||||    
T  25477684 taaaagcaacagaaagaaaacaa 25477662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 25469908 - 25469724
Alignment:
Q  18 tagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactctta 117  Q
    |||||| |||||||||||||||||||||| |||| | | |  |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  25469908 tagttgattaccggaaaagatcagacgttgatcgattattgcgtacttttccttgttaaaaatcttctccttcacactgtatatcgtgtctgaactctta 25469809  T
Q  118 accgtcaaggggatcaccttactttccatggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgata 202  Q
    ||| ||||||| | |||||| |  ||||   |||||||||||||| ||||||| ||| |||||||||| ||| ||||||||||||    
T  25469808 accctcaagggtaacacctttccatccagcttctttatgaatatttgcatctgtaccacaattgccaacacagtaatcaatgata 25469724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 63 - 222
Target Start/End: Original strand, 32660658 - 32660819
Alignment:
Q  63 cttttccttgtcaaaaatcttctccttcacactg--tctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaata 160  Q
    |||||||| |||||||||||||||||||||||||  | ||| |||| |||||| |||||| ||||||||||   ||| ||   ||||||| ||||||| |    
T  32660658 cttttcctcgtcaaaaatcttctccttcacactgattatattgtgtatgaactattaaccctcaaggggatattctttctagtcatggtcattatgaaaa 32660757  T
Q  161 ttagcatctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaaca 222  Q
    || ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  32660758 tttgcatctgcatcgcaattgccaacacattaatcaatggtaaaagcaacagaaagaaaaca 32660819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 32655772 - 32655834
Alignment:
Q  153 tatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaa 215  Q
    |||||||||| |||||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  32655772 tatgaatatttgcatctgcaccgcaattgccaacacattaatcagtgattaaagcaacagaaa 32655834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 32748139 - 32748035
Alignment:
Q  99 tatcgtgtctgaactcttaaccgtcaaggggatcaccttactttcc---atggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatc 195  Q
    |||||||||||||||||||||| ||| ||||| |  |||  ||||    ||| |||||||||||||| |||||||||||||||||||||| |||||||||    
T  32748139 tatcgtgtctgaactcttaaccatcagggggaacctcttgttttcatatatgatctttatgaatatttgcatctgcaccgcaattgccaacacattaatc 32748040  T
Q  196 aatga 200  Q
    |||||    
T  32748039 aatga 32748035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 32651367 - 32651580
Alignment:
Q  16 tctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactct 115  Q
    |||||||| ||||| | |||||||| |||||  |||| |||| ||  |||||||| ||||| |||||||||||||||| | ||||| |||||  |||| |    
T  32651367 tctagttgtttaccagcaaagatcaaacgttggtcgtacactggggtcttttcctcgtcaacaatcttctccttcacattttctatggtgtccaaactat 32651466  T
Q  116 taaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaa 215  Q
    ||||| ||| | ||||   ||| ||    |||  | || |||| ||| ||| |||||  ||||||||||| |||| |||||||||| ||||||||| |||    
T  32651467 taaccctcaggaggatacactttctagttatgccccttgtgaaaattcgcaactgcattgcaattgccaacacatcaatcaatgattaaagcaacataaa 32651566  T
Q  216 gaaaacaaaacccc 229  Q
    ||||||||||||||    
T  32651567 gaaaacaaaacccc 32651580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 32858968 - 32858860
Alignment:
Q  12 gtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtactttt-ccttgtcaaaaatcttctccttcacactgtctatcgtgtctga 110  Q
    ||||||||||| |||||||||||| ||||||||||   |||  | |||||| |||| ||||||||| |||| ||||||||||| || |||||||||||||    
T  32858968 gtcatctagttccttaccggaaaatatcagacgttggccgtgta-ttggtaatttttccttgtcaagaatcatctccttcacattgactatcgtgtctga 32858870  T
Q  111 actcttaacc 120  Q
    ||||||||||    
T  32858869 actcttaacc 32858860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 32752135 - 32752074
Alignment:
Q  144 catggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgataaaa 205  Q
    |||| |||||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||    
T  32752135 catgatctttatgaatatttgcatctgtgccgcaattgccaacacattaatcaatgaaaaaa 32752074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 32763402 - 32763335
Alignment:
Q  66 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatca 133  Q
    ||||||||||| |||||| | ||||||| | ||||| ||||||||||||| |||| ||||||||||||    
T  32763402 ttccttgtcaagaatctttttcttcacattttctattgtgtctgaactctcaaccctcaaggggatca 32763335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 32557405 - 32557623
Alignment:
Q  7 tggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgt 106  Q
    |||| |||||||||| |||||  || ||| ||||||||||  | || |||| ||  | |||||||||||| |||||| ||||||||| |  |||||||||    
T  32557405 tggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcactgggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgt 32557504  T
Q  107 ctgaactcttaaccgtcaaggggatcaccttacttt--ccatggtctttatgaatattagcatctgcaccgcaattgccaaaacattaatcaatgataaa 204  Q
    |||||||||  ||| |||||||| ||| ||| |     |||||  ||  ||||||||| |||||||||||||| | ||||| | || ||||||| || ||    
T  32557505 ctgaactctccaccttcaagggggtcatctttccacaaccatgtgct--atgaatatttgcatctgcaccgcagtcgccaacaaataaatcaataatgaa 32557602  T
Q  205 agcaacagaaagaaaacaaaa 225  Q
    | || |||||| |||||||||    
T  32557603 accaccagaaataaaacaaaa 32557623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 224
Target Start/End: Complemental strand, 32768405 - 32768245
Alignment:
Q  66 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcacctta--ctttccatgg-tctttatgaatatt 162  Q
    |||||||| ||||| ||||| ||||||| |  |||||||||||||| |||||||| ||| ||| || | ||||  ||||||| |  | |||||  |||||    
T  32768405 ttccttgtaaaaaa-cttcttcttcacattaactatcgtgtctgaaatcttaaccctcaggggaataatcttaatctttccaggcatatttattgatatt 32768307  T
Q  163 agcatctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaa 224  Q
      |||||||||  ||||||| || |||| ||||||||| |||||||| ||||||||||||||    
T  32768306 tccatctgcacgacaattgctaacacatgaatcaatgacaaaagcaatagaaagaaaacaaa 32768245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 28475267 - 28475213
Alignment:
Q  66 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 120  Q
    ||||||||||| |||||||| |||||||  | |||||||||||||||||| ||||    
T  28475267 ttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctcaacc 28475213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 32553070 - 32553112
Alignment:
Q  151 tttatgaatattagcatctgcaccgcaattgccaaaacattaa 193  Q
    |||||||||||| |||||||||||||||||| ||| |||||||    
T  32553070 tttatgaatatttgcatctgcaccgcaattgtcaacacattaa 32553112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 32895135 - 32894973
Alignment:
Q  66 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagc 165  Q
    |||||| |||| |||||||||| | ||| ||  |||| ||||||||||||||||| ||| ||||| |  ||  |   ||  ||||| |||||||||| ||    
T  32895135 ttccttctcaagaatcttctccattacattgaatatcctgtctgaactcttaaccatcagggggaacctctctccaccctgggtctctatgaatatttgc 32895036  T
Q  166 atctgcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaaaccc 228  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||| ||||||    
T  32895035 atctgcaccgcaattgccaacacattaatcaataataaaagcaacaaaaacaaaaccaaaccc 32894973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 37577611 - 37577453
Alignment:
Q  70 ttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaaccgtcaaggggatcaccttactttccatggtctttatgaatattagcatct 169  Q
    ||||||| ||||||||||||||||  | ||||||||||||||||||||| | |||  ||||||  ||| ||    | ||||  |||| ||||||||||||    
T  37577611 ttgtcaagaatcttctccttcacatcggctatcgtgtctgaactcttaatcctcagtgggatcctctttctagtgagggtcaatatgtatattagcatct 37577512  T
Q  170 gcaccgcaattgccaaaacattaatcaatgataaaagcaacagaaagaaaacaaaaccc 228  Q
    |||   || ||| ||| ||||||||| |||| |||||||||||||||||||||||||||    
T  37577511 gcaagacatttggcaacacattaatccatgacaaaagcaacagaaagaaaacaaaaccc 37577453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 7969424 - 7969563
Alignment:
Q  1 atggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggta--cttt-tccttgtcaaaaatcttctccttcacactgt 97  Q
    |||||| ||| |||||||| |||||||| || ||||||||||||||   |||  ||||||||  |||| | |||||| |||||||||||||||||| ||     
T  7969424 atggtcaggctgtcatctaattgcttactggcaaagatcagacgttgcacgtgtacttggtaatctttattcttgtcgaaaatcttctccttcacattgc 7969523  T
Q  98 ctatcgtgtctgaactcttaaccgtcaaggggatcacctt 137  Q
    |||| ||||||||||||||||||   | ||||||||||||    
T  7969524 ctattgtgtctgaactcttaacccctatggggatcacctt 7969563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 7969623 - 7969660
Alignment:
Q  188 cattaatcaatgataaaagcaacagaaagaaaacaaaa 225  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  7969623 cattaatcaatgataaaaacaacataaagaaaacaaaa 7969660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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