View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_high_30 (Length: 242)
Name: NF1402_high_30
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 42534779 - 42534997
Alignment:
| Q |
21 |
ggtggcaacatcaagaaaagcaacaaaaacatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactc |
120 |
Q |
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| T |
42534779 |
ggtggcaacatcaagaaaagaaacaagaacatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactc |
42534878 |
T |
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| Q |
121 |
cacatagattccaaaacatgcgtttcagtcatgaacttgacactcat-------aacataaatctcctccacatatcttgccctttttgatgggaaggac |
213 |
Q |
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| T |
42534879 |
cacatagattccaaaacatgcgtttcagtcatgaacttgacactcatcattctaaacataaatctcctccacatatcttgccctttttgatgggaaggac |
42534978 |
T |
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| Q |
214 |
caaaattgttcatatcact |
232 |
Q |
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| T |
42534979 |
caaaattgttcagatcact |
42534997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 42528222 - 42528315
Alignment:
| Q |
36 |
aaaagcaacaaaaacatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactccacatagat |
129 |
Q |
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| T |
42528222 |
aaaaacaacaagaacatcatcaagaaccttcaagaccgcgagttatcttctaaacctcatcgtgcttttgttgctgttactgccccacatagat |
42528315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 167
Target Start/End: Original strand, 27820166 - 27820306
Alignment:
| Q |
27 |
aacatcaagaaaagcaacaaaaacatcatcaagaaccttcaagaccgcgagttatcttgtaaacatcatcgtgcttttgttactgctactactccacata |
126 |
Q |
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| T |
27820166 |
aacatcaagatcaacaacaaaaacatcatcaagaagcttcaaactcgcgagatttctcctaaacctcatcgttcctttgttgctgctacttcaccacata |
27820265 |
T |
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| Q |
127 |
gattccaaaacatgcgtttcagtcatgaacttgacactcat |
167 |
Q |
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| T |
27820266 |
gattccagaacatgcgtttgactcatcaatttgatactcat |
27820306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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