View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_high_31 (Length: 238)

Name: NF1402_high_31
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_high_31
NF1402_high_31
[»] chr4 (1 HSPs)
chr4 (1-225)||(39131898-39132122)
[»] chr7 (6 HSPs)
chr7 (1-209)||(21130614-21130822)
chr7 (1-218)||(18658776-18658993)
chr7 (1-218)||(21111654-21111871)
chr7 (25-197)||(21098402-21098574)
chr7 (25-107)||(21108111-21108193)
chr7 (23-71)||(29213204-29213252)
[»] chr3 (11 HSPs)
chr3 (6-95)||(26744261-26744350)
chr3 (23-116)||(47212442-47212535)
chr3 (6-95)||(26751186-26751275)
chr3 (23-95)||(26714031-26714103)
chr3 (23-95)||(26698879-26698951)
chr3 (23-95)||(26737267-26737339)
chr3 (23-92)||(26690345-26690414)
chr3 (23-92)||(26731656-26731725)
chr3 (23-95)||(26734042-26734114)
chr3 (23-92)||(26694506-26694575)
chr3 (7-119)||(47193355-47193467)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 39132122 - 39131898
Alignment:
Q  1 aaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctcctt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||||||||    
T  39132122 aaaattctatgcttaccttcaacacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaactctcctt 39132023  T
Q  101 ccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |    
T  39132022 ccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccgccttttccaatctcatt 39131923  T
Q  201 actgaaattcttggttgccaccttc 225  Q
    |||||||||||||||||||||||||    
T  39131922 actgaaattcttggttgccaccttc 39131898  T

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Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21130614 - 21130822
Alignment:
Q  1 aaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctcctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  21130614 aaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaaactctcctt 21130713  T
Q  101 ccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaat 200  Q
    | ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||   |||||||| |||||||||||||||||||||||  |    
T  21130714 ctccttgtttagcttcattcaatctctttattgctgcatctctttgatccggcaatgtacctctatatacaactcctcctccacctcttccaatctcgtt 21130813  T
Q  201 actgaaatt 209  Q
    |||||||||    
T  21130814 actgaaatt 21130822  T

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Target: chr7; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 18658776 - 18658993
Alignment:
Q  1 aaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctcctt 100  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  18658776 aaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattctcctt 18658875  T
Q  101 ccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaat 200  Q
    | ||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||   ||||||| ||||||||||||||||||||||||| |    
T  18658876 ctccttgtttagcttcatttaatctctttattgctgcatgtctttgatctggcaatgtacctctatatacaatccctcctccacctcttccaatctcatt 18658975  T
Q  201 actgaaattcttggttgc 218  Q
    |||||||||||| |||||    
T  18658976 actgaaattctttgttgc 18658993  T

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Target: chr7; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 21111654 - 21111871
Alignment:
Q  1 aaaattctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctcctt 100  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||    
T  21111654 aaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaattctcctt 21111753  T
Q  101 ccccttgattagcttcattcaatctctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctcaat 200  Q
    | ||||| ||||||||||| ||||||||||||||| | ||||||| ||| ||||||||||||   ||||||| ||||||||||||||||||||||||| |    
T  21111754 ctccttgtttagcttcatttaatctctttattgctacatgtctttcatctggcaatgtacctctatatacaatccctcctccacctcttccaatctcatt 21111853  T
Q  201 actgaaattcttggttgc 218  Q
    |||||||||||| |||||    
T  21111854 actgaaattctttgttgc 21111871  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 21098574 - 21098402
Alignment:
Q  25 caatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttcattcaatc 124  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||| || ||||| ||||| |  || |  |  | ||    
T  21098574 caatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcaccttcaccttgttgtgcattgtaaagtc 21098475  T
Q  125 tctttattgctgcttgtctttgatccggcaatgtacctaggtatacaacccctcctccacctcttccaatctc 197  Q
    |||||||||| || ||||||  ||| |  ||| | |||  ||||||||| |||||||||||||||||||||||    
T  21098474 tctttattgcagcatgtcttccatcagataatatgcctttgtatacaacacctcctccacctcttccaatctc 21098402  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 21108193 - 21108111
Alignment:
Q  25 caatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttg 107  Q
    ||||||||||||||||| ||||| |||||||| ||||||||||||||||| | ||||||||| ||||| || ||||| |||||    
T  21108193 caatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctagaaattcaccttctccttg 21108111  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 29213204 - 29213252
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaat 71  Q
    ||||||| ||||||| ||||||||| ||||||||||||||| |||||||    
T  29213204 cacaataaccccacaattcaatcaaattcatgtggttaagctttccaat 29213252  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 26744261 - 26744350
Alignment:
Q  6 tctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 95  Q
    |||||| || || ||| ||||||| ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26744261 tctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 26744350  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 47212442 - 47212535
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttccccttgattagcttc 116  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || ||||||||| |||| |||||||| |||||    
T  47212442 cacaataaccccacatttcaatcaaattcatgtggttaagctttccaatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 47212535  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 95
Target Start/End: Original strand, 26751186 - 26751275
Alignment:
Q  6 tctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 95  Q
    ||||||||| || ||| ||||||| ||||||||  ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26751186 tctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcggcaagaaactc 26751275  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 26714031 - 26714103
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 95  Q
    ||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26714031 cacaataaccccacattccaatcaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactc 26714103  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 26698879 - 26698951
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 95  Q
    ||||||| ||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  26698879 cacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcagcaagaaactc 26698951  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 26737267 - 26737339
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 95  Q
    ||||||| ||||||||| |||| || ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  26737267 cacaataaccccacattccaattaaattcatgtggttaagccttccaatgatgctaacttctgcaagaaactc 26737339  T

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Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 26690414 - 26690345
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 92  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  26690414 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa 26690345  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 26731725 - 26731656
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 92  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||    
T  26731725 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa 26731656  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 26734042 - 26734114
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactc 95  Q
    ||||||| ||||||||| | ||||| |||||||| |||||||||||||||||||| |||||| ||||||||||    
T  26734042 cacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcaacaagaaactc 26734114  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 26694575 - 26694506
Alignment:
Q  23 cacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaa 92  Q
    ||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| | ||||||||||||    
T  26694575 cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaagttcagcaagaaa 26694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 47193467 - 47193355
Alignment:
Q  7 ctatgcttaccttcaacacaatatccccacatttcaatcaagttcatgtggttaagccttccaatgatgcttacttcagcaagaaactctccttcccctt 106  Q
    ||||| || ||||||||||||||||||||||| ||||| || ||||| ||||| | | | |||||  |||||| |||||| ||||| ||  |||| || |    
T  47193467 ctatgtttcccttcaacacaatatccccacatatcaattaaattcatatggttcaacataccaattgtgcttatttcagctagaaattcagcttctccct 47193368  T
Q  107 gattagcttcatt 119  Q
    ||| |||||||||    
T  47193367 gatgagcttcatt 47193355  T

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