View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_high_35 (Length: 207)

Name: NF1402_high_35
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_high_35
NF1402_high_35
[»] chr4 (6 HSPs)
chr4 (1-131)||(11779029-11779159)
chr4 (7-131)||(11696056-11696180)
chr4 (7-131)||(11797897-11798021)
chr4 (4-131)||(11675957-11676084)
chr4 (4-131)||(11684236-11684363)
chr4 (7-131)||(11701853-11701977)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-131)||(16492-16622)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 11779029 - 11779159
Alignment:
Q  1 ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779029 ggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc 11779128  T
Q  101 tctttggtgctttcattgctgattcttttct 131  Q
    |||||||||| ||||||||||||||||||||    
T  11779129 tctttggtgcattcattgctgattcttttct 11779159  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11696056 - 11696180
Alignment:
Q  7 ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||| |||||||||||||||||||||| |||||||||||||    
T  11696056 ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttg 11696155  T
Q  107 gtgctttcattgctgattcttttct 131  Q
    |||||||||||||||||||||||||    
T  11696156 gtgctttcattgctgattcttttct 11696180  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11797897 - 11798021
Alignment:
Q  7 ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||    
T  11797897 ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttg 11797996  T
Q  107 gtgctttcattgctgattcttttct 131  Q
    |||||||||||||||||||||||||    
T  11797997 gtgctttcattgctgattcttttct 11798021  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 11675957 - 11676084
Alignment:
Q  4 aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  11675957 aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct 11676056  T
Q  104 ttggtgctttcattgctgattcttttct 131  Q
    ||||||||||  ||||||||||||||||    
T  11676057 ttggtgcttttgttgctgattcttttct 11676084  T

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Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 11684236 - 11684363
Alignment:
Q  4 aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  11684236 aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct 11684335  T
Q  104 ttggtgctttcattgctgattcttttct 131  Q
    ||||||||||  ||||||||||||||||    
T  11684336 ttggtgcttttgttgctgattcttttct 11684363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11701853 - 11701977
Alignment:
Q  7 ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg 106  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |    
T  11701853 ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttag 11701952  T
Q  107 gtgctttcattgctgattcttttct 131  Q
    |||||||  ||||||||||||||||    
T  11701953 gtgcttttgttgctgattcttttct 11701977  T

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Target: scaffold0294 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 16492 - 16622
Alignment:
Q  1 ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16492 ggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctc 16591  T
Q  101 tctttggtgctttcattgctgattcttttct 131  Q
    |||| ||||||||| ||||||||||||||||    
T  16592 tcttaggtgctttcgttgctgattcttttct 16622  T

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