View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_high_8 (Length: 372)
Name: NF1402_high_8
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 62 - 364
Target Start/End: Original strand, 21765868 - 21766173
Alignment:
| Q |
62 |
tcttctaatcctatggccaaccccatataatgagacaaggtttcgttgttgtttataaaatagctaacactgttctggattggggttgatggttagctta |
161 |
Q |
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| T |
21765868 |
tcttctaatcctatggccaaccccatataatgagacaaggtttcattgttgtttatcaaatagtttacaccgttttggattggtgatgatggttagcttg |
21765967 |
T |
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| Q |
162 |
ctttttcttcctacaacatgtttactctagtttgcatacaattgaaattgaagannnnnnnnnn--ggagtcgtagtataactttgcttggatgtcatag |
259 |
Q |
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| T |
21765968 |
ctttttcttattacaacatgttgaatctaggttgtatacaattgaaattgaagatatatttttcttggagtcatagtataacttcgcttggaagtcatag |
21766067 |
T |
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| Q |
260 |
tttgttcattcatgtgtaaagttaggtttttactttttatgcatttaaatgttattttgagatttaa-tttgctacaggtgcttgattgctgtttgcacc |
358 |
Q |
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| T |
21766068 |
tttattcattcatgtgtaaagttaggtttttactttttattcatttaaatattattttgagatttaattttgctacaggtgcttgattgctgtttgcacc |
21766167 |
T |
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| Q |
359 |
tatgat |
364 |
Q |
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| T |
21766168 |
tctgat |
21766173 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 294 - 359
Target Start/End: Complemental strand, 32926985 - 32926920
Alignment:
| Q |
294 |
ttttatgcatttaaatgttattttgagatttaatttgctacaggtgcttgattgctgtttgcacct |
359 |
Q |
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| T |
32926985 |
ttttatgcattgaaatcatatcttcagatttaatttgcaacaggtgcttgctagctgtttgcacct |
32926920 |
T |
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