View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_high_9 (Length: 371)

Name: NF1402_high_9
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_high_9
NF1402_high_9
[»] chr4 (11 HSPs)
chr4 (18-366)||(11676007-11676351)
chr4 (18-366)||(11684286-11684630)
chr4 (222-367)||(11697722-11697867)
chr4 (18-147)||(11701900-11702029)
chr4 (18-137)||(11696103-11696222)
chr4 (18-143)||(11797944-11798069)
chr4 (18-126)||(11779082-11779190)
chr4 (243-367)||(11707451-11707575)
chr4 (275-367)||(11787793-11787885)
chr4 (275-367)||(11799960-11800052)
chr4 (249-367)||(11783938-11784054)
[»] scaffold0294 (2 HSPs)
scaffold0294 (18-126)||(16545-16653)
scaffold0294 (243-367)||(19515-19639)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 11676007 - 11676351
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11676007 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcata 11676106  T
Q  118 ctcgcttctttcatttatatcatggtcagtatttttgttacttaatatgacgtctaaagacttgaatttttcttcttctgtacatattagtattagatag 217  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  11676107 ctcgcttctctcatttatatcttggtcagtattgttgttacttaatatgacgtccaaagacttgaatttttcttcttctgtacatactagtattagatag 11676206  T
Q  218 acagatagctctattggtttgttgctttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctc 317  Q
    |||||||||||||||||||| ||| |||||||||||    ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  11676207 acagatagctctattggtttattgttttgatgttgg----tggcttaatataatttacagggactaggcttgttaacattatcagctatgcttccttctc 11676302  T
Q  318 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11676303 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 11676351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 11684286 - 11684630
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11684286 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcata 11684385  T
Q  118 ctcgcttctttcatttatatcatggtcagtatttttgttacttaatatgacgtctaaagacttgaatttttcttcttctgtacatattagtattagatag 217  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  11684386 ctcgcttctctcatttatatcttggtcagtattgttgttacttaatatgacgtccaaagacttgaatttttcttcttctgtacatactagtattagatag 11684485  T
Q  218 acagatagctctattggtttgttgctttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctc 317  Q
    |||||||||||||||||||| ||| |||||||||||    ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  11684486 acagatagctctattggtttattgttttgatgttgg----tggcttaatataatttacagggactaggcttgttaacattatcagctatgcttccttctc 11684581  T
Q  318 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11684582 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 11684630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 222 - 367
Target Start/End: Original strand, 11697722 - 11697867
Alignment:
Q  222 atagctctattggtttgttgctttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcac 321  Q
    |||| |||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11697722 atagttctattggcttattggtttgatgttggtcattggcttaatatgaattacagggactaggcttgttaacattatcagctatgcttccttcactcac 11697821  T
Q  322 atcctgttctcctgagtcacaagtaatcttatttttcatctcactc 367  Q
    ||| |||||| || | ||||||||||||||||| ||||||||||||    
T  11697822 atcttgttctactcaatcacaagtaatcttattcttcatctcactc 11697867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 11701900 - 11702029
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||| ||||||| ||| |||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  11701900 tgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcata 11701999  T
Q  118 ctcgcttctttcatttatatcatggtcagt 147  Q
    || |||||| | || |||||| ||||||||    
T  11702000 cttgcttctcttatctatatcttggtcagt 11702029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11696103 - 11696222
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||| |||||||||||     
T  11696103 tgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatg 11696202  T
Q  118 ctcgcttctttcatttatat 137  Q
    || |||||| |||| |||||    
T  11696203 cttgcttctctcatctatat 11696222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 11797944 - 11798069
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||| ||||||||| |||||| ||||  ||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||| ||||||||||||    
T  11797944 tgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcata 11798043  T
Q  118 ctcgcttctttcatttatatcatggt 143  Q
    || |||||| |||| ||||| |||||    
T  11798044 cttgcttctctcatctatattatggt 11798069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 11779082 - 11779190
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||| ||||||||||    
T  11779082 tgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattcttttcttggacgctatcacacaatcata 11779181  T
Q  118 ctcgcttct 126  Q
    || ||||||    
T  11779182 cttgcttct 11779190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 11707451 - 11707575
Alignment:
Q  243 tttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcaca 342  Q
    |||||||||||||||||||| || |  |  | |||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||| | |||||    
T  11707451 tttgatgttggtcattggctgaaaacaatttacagggactaggcttgttaacattatcagctttgctcccttcactcacattttgttctcctcaatcaca 11707550  T
Q  343 agtaatcttatttttcatctcactc 367  Q
    |||||||||||| ||||||||||||    
T  11707551 agtaatcttattcttcatctcactc 11707575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 11787793 - 11787885
Alignment:
Q  275 cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcactc 367  Q
    |||||||||||||||||||| || || |||||||| |||||  ||||||  ||||||||| |||||||||| |||||||| ||||||||||||    
T  11787793 cagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactc 11787885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 11799960 - 11800052
Alignment:
Q  275 cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcactc 367  Q
    |||||||||||||||||||| || || |||||||| |||||  ||||||  ||||||||| |||||||||| |||||||| ||||||||||||    
T  11799960 cagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactc 11800052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 11783938 - 11784054
Alignment:
Q  249 gttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaat 348  Q
    ||||||||||||||||||  ||  | ||||||||||||||||||||||| || |||||||| |||||  | |||   | ||||||| |||||||||||||    
T  11783938 gttggtcattggcttaat--gatttgcagggactaggcttgttaacattgtcggctatgctgccttccattacaatttattctcctcagtcacaagtaat 11784035  T
Q  349 cttatttttcatctcactc 367  Q
     ||||| ||| ||||||||    
T  11784036 gttattcttcttctcactc 11784054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 16545 - 16653
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||| |||||||||||||||||||||||  ||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  16545 tgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgattcttttcttggacgctatcacacaatcata 16644  T
Q  118 ctcgcttct 126  Q
    || ||||||    
T  16645 cttgcttct 16653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 19515 - 19639
Alignment:
Q  243 tttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcaca 342  Q
    |||||||||||||||||||||||||| |  | ||||||||||||||||||||| ||||| |||| |||||||| ||| |||| |||||| || | |||||    
T  19515 tttgatgttggtcattggcttaatataatttacagggactaggcttgttaacactatcaactattcttccttcactcgcatcttgttctactcaatcaca 19614  T
Q  343 agtaatcttatttttcatctcactc 367  Q
    |||||||||||| ||||| ||||||    
T  19615 agtaatcttattcttcatttcactc 19639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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