View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_low_1 (Length: 798)

Name: NF1402_low_1
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_low_1
NF1402_low_1
[»] chr4 (38 HSPs)
chr4 (28-271)||(13740246-13740488)
chr4 (28-284)||(21355727-21355992)
chr4 (1-235)||(45143890-45144124)
chr4 (1-235)||(45152659-45152893)
chr4 (29-235)||(23218215-23218421)
chr4 (550-746)||(21348326-21348520)
chr4 (34-238)||(47825813-47826027)
chr4 (32-238)||(54785186-54785403)
chr4 (34-238)||(21604330-21604545)
chr4 (34-238)||(46164366-46164581)
chr4 (34-238)||(8432980-8433195)
chr4 (29-216)||(33753956-33754142)
chr4 (36-148)||(38115443-38115562)
chr4 (36-133)||(14799999-14800096)
chr4 (379-417)||(5442447-5442485)
chr4 (379-417)||(23988253-23988291)
chr4 (379-417)||(27769120-27769158)
chr4 (379-417)||(32683135-32683173)
chr4 (379-417)||(48262131-48262169)
chr4 (380-417)||(32323126-32323163)
chr4 (236-271)||(23218439-23218474)
chr4 (236-271)||(45143837-45143872)
chr4 (236-271)||(45152606-45152641)
chr4 (379-417)||(37916864-37916902)
chr4 (379-417)||(50019247-50019285)
chr4 (379-417)||(51321923-51321961)
chr4 (379-417)||(54342203-54342241)
chr4 (29-94)||(3187581-3187646)
chr4 (380-417)||(29649131-29649168)
chr4 (379-416)||(38234660-38234697)
chr4 (380-417)||(49833973-49834010)
chr4 (381-417)||(37827533-37827569)
chr4 (381-417)||(41726162-41726198)
chr4 (379-414)||(5105001-5105036)
chr4 (383-417)||(48531925-48531959)
chr4 (379-417)||(49500640-49500678)
chr4 (379-409)||(54852661-54852691)
chr4 (379-408)||(16019913-16019942)
[»] chr3 (37 HSPs)
chr3 (1-235)||(52893349-52893583)
chr3 (29-235)||(2338811-2339015)
chr3 (6-182)||(21239406-21239582)
chr3 (550-746)||(50724024-50724219)
chr3 (550-746)||(50788630-50788825)
chr3 (34-238)||(9456318-9456533)
chr3 (38-133)||(40922976-40923071)
chr3 (38-133)||(2733793-2733888)
chr3 (1-43)||(2338761-2338803)
chr3 (379-417)||(10728125-10728163)
chr3 (379-417)||(11432603-11432641)
chr3 (379-417)||(17947276-17947314)
chr3 (379-417)||(27239327-27239365)
chr3 (379-417)||(36673260-36673298)
chr3 (381-417)||(20833954-20833990)
chr3 (381-417)||(37455892-37455928)
chr3 (236-271)||(2339033-2339068)
chr3 (236-271)||(21239338-21239373)
chr3 (378-417)||(54629909-54629948)
chr3 (383-417)||(10661244-10661278)
chr3 (379-417)||(18750691-18750729)
chr3 (379-417)||(45254555-45254593)
chr3 (379-417)||(50761222-50761260)
chr3 (379-417)||(50902418-50902456)
chr3 (379-417)||(52617087-52617125)
chr3 (380-417)||(48380206-48380243)
chr3 (379-414)||(7319139-7319174)
chr3 (379-414)||(24149837-24149872)
chr3 (382-417)||(51736870-51736905)
chr3 (97-156)||(4329855-4329916)
chr3 (379-417)||(31645364-31645402)
chr3 (379-417)||(39841555-39841593)
chr3 (379-417)||(40898124-40898162)
chr3 (383-417)||(44904961-44904995)
chr3 (198-235)||(21239391-21239428)
chr3 (380-417)||(23752504-23752541)
chr3 (379-416)||(34483199-34483236)
[»] chr8 (35 HSPs)
chr8 (29-235)||(1668023-1668229)
chr8 (29-235)||(16658738-16658944)
chr8 (29-235)||(38521221-38521424)
chr8 (41-234)||(6786356-6786550)
chr8 (34-238)||(22432291-22432506)
chr8 (34-238)||(29182575-29182790)
chr8 (34-238)||(27576667-27576888)
chr8 (34-238)||(774680-774896)
chr8 (28-128)||(22014860-22014960)
chr8 (29-163)||(43916091-43916225)
chr8 (36-148)||(11472357-11472476)
chr8 (36-133)||(42808687-42808784)
chr8 (184-238)||(22014748-22014802)
chr8 (181-238)||(780493-780550)
chr8 (41-133)||(33360397-33360489)
chr8 (34-89)||(780362-780417)
chr8 (181-238)||(18068479-18068536)
chr8 (97-156)||(34212961-34213020)
chr8 (379-417)||(14781248-14781286)
chr8 (379-417)||(18957834-18957872)
chr8 (379-417)||(32498947-32498985)
chr8 (379-417)||(34893414-34893452)
chr8 (379-417)||(37857933-37857971)
chr8 (380-417)||(44724898-44724935)
chr8 (381-417)||(9287608-9287644)
chr8 (236-271)||(38521442-38521477)
chr8 (379-417)||(4030443-4030481)
chr8 (379-417)||(18305077-18305115)
chr8 (383-417)||(19716983-19717017)
chr8 (383-417)||(42304745-42304779)
chr8 (236-267)||(16658689-16658720)
chr8 (383-417)||(10294516-10294550)
chr8 (379-417)||(16365333-16365371)
chr8 (379-413)||(20831080-20831114)
chr8 (379-417)||(39466634-39466672)
[»] chr2 (23 HSPs)
chr2 (29-235)||(3935367-3935573)
chr2 (43-231)||(38978382-38978570)
chr2 (34-238)||(25697567-25697782)
chr2 (28-93)||(32339602-32339669)
chr2 (379-417)||(214625-214663)
chr2 (379-417)||(379966-380004)
chr2 (379-417)||(10658486-10658524)
chr2 (379-417)||(18178328-18178366)
chr2 (379-417)||(25289211-25289249)
chr2 (379-417)||(26789841-26789879)
chr2 (379-417)||(28845634-28845672)
chr2 (379-418)||(3464642-3464681)
chr2 (379-414)||(20156344-20156379)
chr2 (236-271)||(38978592-38978627)
chr2 (379-417)||(30239161-30239199)
chr2 (379-417)||(33136653-33136691)
chr2 (109-150)||(8485531-8485572)
chr2 (104-156)||(20917027-20917079)
chr2 (381-417)||(43079540-43079576)
chr2 (236-267)||(3935591-3935622)
chr2 (383-417)||(2374033-2374067)
chr2 (187-220)||(8485607-8485640)
chr2 (380-417)||(13832669-13832706)
[»] scaffold1160 (2 HSPs)
scaffold1160 (29-238)||(2382-2585)
scaffold1160 (236-271)||(2324-2359)
[»] scaffold0393 (1 HSPs)
scaffold0393 (28-235)||(11163-11367)
[»] chr5 (23 HSPs)
chr5 (28-238)||(3174068-3174289)
chr5 (34-238)||(32863552-32863763)
chr5 (34-238)||(10572607-10572822)
chr5 (29-163)||(19209107-19209241)
chr5 (29-163)||(23737872-23738006)
chr5 (28-139)||(43300188-43300299)
chr5 (28-154)||(41958593-41958717)
chr5 (109-235)||(18739449-18739581)
chr5 (13-84)||(18739382-18739453)
chr5 (38-133)||(22273148-22273243)
chr5 (379-417)||(4239580-4239618)
chr5 (379-417)||(13717151-13717189)
chr5 (379-417)||(13926989-13927027)
chr5 (379-417)||(13999214-13999252)
chr5 (379-417)||(40012817-40012855)
chr5 (379-417)||(4549364-4549402)
chr5 (379-417)||(39853408-39853446)
chr5 (381-417)||(5950470-5950506)
chr5 (379-415)||(7947134-7947170)
chr5 (379-415)||(28593000-28593036)
chr5 (552-634)||(5527370-5527452)
chr5 (379-417)||(37014913-37014951)
chr5 (384-417)||(1459300-1459333)
[»] chr7 (35 HSPs)
chr7 (34-238)||(6472244-6472459)
chr7 (34-238)||(9371711-9371926)
chr7 (34-163)||(21358022-21358155)
chr7 (38-238)||(35012978-35013190)
chr7 (28-154)||(44660309-44660434)
chr7 (46-133)||(31419280-31419367)
chr7 (379-417)||(3023980-3024018)
chr7 (379-417)||(21068414-21068452)
chr7 (379-417)||(23102347-23102385)
chr7 (379-417)||(29894013-29894051)
chr7 (379-417)||(39785154-39785192)
chr7 (381-417)||(29613906-29613942)
chr7 (382-417)||(37971509-37971544)
chr7 (379-417)||(510704-510742)
chr7 (379-417)||(9881401-9881439)
chr7 (97-156)||(12003038-12003099)
chr7 (379-417)||(18839350-18839388)
chr7 (379-417)||(28034232-28034270)
chr7 (379-417)||(28343366-28343404)
chr7 (379-417)||(30823643-30823681)
chr7 (379-417)||(37328883-37328921)
chr7 (379-417)||(39029109-39029147)
chr7 (379-417)||(40459833-40459871)
chr7 (382-416)||(46035452-46035486)
chr7 (379-417)||(48136362-48136400)
chr7 (380-417)||(12741430-12741467)
chr7 (380-417)||(46405302-46405339)
chr7 (379-411)||(33891384-33891416)
chr7 (379-414)||(3635187-3635222)
chr7 (382-417)||(32884815-32884850)
chr7 (383-417)||(7994212-7994246)
chr7 (379-413)||(12893108-12893142)
chr7 (379-409)||(26183121-26183151)
chr7 (379-409)||(33383668-33383698)
chr7 (379-417)||(47067746-47067784)
[»] chr1 (33 HSPs)
chr1 (34-238)||(29599251-29599466)
chr1 (34-238)||(324583-324798)
chr1 (28-156)||(17480981-17481109)
chr1 (34-235)||(26354912-26355125)
chr1 (34-163)||(48184225-48184352)
chr1 (34-116)||(26014504-26014586)
chr1 (44-238)||(6165049-6165245)
chr1 (29-128)||(16764520-16764621)
chr1 (28-126)||(10801550-10801650)
chr1 (186-238)||(16764681-16764733)
chr1 (184-238)||(10801711-10801765)
chr1 (181-238)||(26014430-26014487)
chr1 (379-417)||(6313632-6313670)
chr1 (379-417)||(25613148-25613186)
chr1 (379-417)||(28386558-28386596)
chr1 (379-417)||(29395538-29395576)
chr1 (379-417)||(46329024-46329062)
chr1 (379-417)||(48176646-48176684)
chr1 (181-238)||(48184143-48184200)
chr1 (379-415)||(15835374-15835410)
chr1 (379-414)||(1923096-1923131)
chr1 (379-417)||(25830360-25830398)
chr1 (379-417)||(49232040-49232078)
chr1 (379-417)||(51702650-51702688)
chr1 (379-416)||(48199004-48199041)
chr1 (379-416)||(48207587-48207624)
chr1 (381-417)||(45273617-45273653)
chr1 (379-414)||(49197761-49197796)
chr1 (379-417)||(9321619-9321657)
chr1 (379-409)||(18799413-18799443)
chr1 (379-417)||(20111682-20111720)
chr1 (383-417)||(38535261-38535295)
chr1 (383-417)||(38557479-38557513)
[»] chr6 (17 HSPs)
chr6 (34-163)||(32397218-32397352)
chr6 (62-163)||(9302995-9303095)
chr6 (38-133)||(7171047-7171142)
chr6 (97-156)||(14654645-14654704)
chr6 (181-238)||(32397136-32397193)
chr6 (379-417)||(7498156-7498194)
chr6 (379-417)||(30384172-30384210)
chr6 (379-417)||(31068476-31068514)
chr6 (379-417)||(31896693-31896731)
chr6 (190-238)||(16497344-16497392)
chr6 (379-417)||(4199587-4199625)
chr6 (97-156)||(32397747-32397808)
chr6 (379-416)||(7104581-7104618)
chr6 (379-416)||(8790012-8790049)
chr6 (184-216)||(9302935-9302967)
chr6 (379-414)||(23929374-23929409)
chr6 (380-417)||(14261552-14261589)
[»] scaffold0054 (2 HSPs)
scaffold0054 (29-238)||(2776-2989)
scaffold0054 (380-417)||(36401-36438)
[»] scaffold1084 (1 HSPs)
scaffold1084 (36-148)||(1208-1324)
[»] scaffold0285 (2 HSPs)
scaffold0285 (29-128)||(8366-8467)
scaffold0285 (187-238)||(8528-8579)
[»] scaffold1300 (1 HSPs)
scaffold1300 (36-170)||(924-1067)
[»] scaffold0005 (1 HSPs)
scaffold0005 (36-133)||(39631-39728)
[»] scaffold0940 (1 HSPs)
scaffold0940 (379-417)||(3574-3612)
[»] scaffold0492 (1 HSPs)
scaffold0492 (379-415)||(12094-12130)
[»] scaffold0042 (1 HSPs)
scaffold0042 (379-417)||(57170-57208)
[»] scaffold0110 (1 HSPs)
scaffold0110 (379-412)||(38750-38783)
[»] scaffold0287 (1 HSPs)
scaffold0287 (379-414)||(10863-10898)
[»] scaffold1521 (1 HSPs)
scaffold1521 (379-417)||(1292-1330)
[»] scaffold0383 (1 HSPs)
scaffold0383 (379-417)||(16147-16185)
[»] scaffold0152 (1 HSPs)
scaffold0152 (379-417)||(29389-29427)
[»] scaffold0839 (1 HSPs)
scaffold0839 (380-417)||(3114-3151)


Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-120; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 28 - 271
Target Start/End: Original strand, 13740246 - 13740488
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13740246 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 13740345  T
Q  128 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccgg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  13740346 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcacttg 13740445  T
Q  228 cggtggtgtgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    |  |||| ||||||||||||||||||||||||||||||||||||    
T  13740446 ctttggt-tgggagaagaaaaggatcgcgtttctcacttgttct 13740488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 28 - 284
Target Start/End: Complemental strand, 21355992 - 21355727
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21355992 aaatcaactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacgttaccttacaagttacaacaattagggtttg 21355893  T
Q  128 tggagagagatggagatagctctctaaactgaagaaggaggagag---------taatcgcggcggcggtgatggatggagaaggaggagagtggtcgcg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  21355892 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatgaaagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcg 21355793  T
Q  219 gctcaccggcggtggtgtgggagaagaaaaggatcgcgtttctcacttgttctacagcagcctaaa 284  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355792 gctcacccgcggtggtgtgggagaagaaaaggatcgcgtttctcacttgttctacagcagcctaaa 21355727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45144124 - 45143890
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144124 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 45144025  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  45144024 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaaggaggaggagagtaatcgcggaggcggtgatggatggaga 45143925  T
Q  201 aggaggagagtggtcgcggctcaccggcggtggtg 235  Q
    |||||||||||| ||||||||||||||||||||||    
T  45143924 aggaggagagtgatcgcggctcaccggcggtggtg 45143890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45152893 - 45152659
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152893 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 45152794  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  45152793 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaaggaggaggagagtaatcgcggaggcggtgatggatggaga 45152694  T
Q  201 aggaggagagtggtcgcggctcaccggcggtggtg 235  Q
    |||||||||||| ||||||||||||||||||||||    
T  45152693 aggaggagagtgatcgcggctcaccggcggtggtg 45152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 23218215 - 23218421
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218215 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 23218314  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23218315 ggagagagatggagataactctctaaactgaagaaggaggagagtaatcgcggcggcagtgatggatggagaaggaggagagtggtcgcggctcaccggc 23218414  T
Q  229 ggtggtg 235  Q
    |||||||    
T  23218415 ggtggtg 23218421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 550 - 746
Target Start/End: Complemental strand, 21348520 - 21348326
Alignment:
Q  550 tcaaattgtaaaataaaaaatggagtatgcgaaaaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaaaggggtgaattaaag 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||    
T  21348520 tcaaattgtaaaataaaaaatggagtatgcgaaaaactaattctcagaacggtggaggtatttttgacggcggtgacgaactgaaagggatggattaaag 21348421  T
Q  650 ggagtgtgattacaaacggtgtgagtgtttttaaaatggtggacatataactcacagcaattgtactccattcttcatcttcatttcatcccaaaaa 746  Q
    |||||||||||||||||   ||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||    
T  21348420 ggagtgtgattacaaac--agtgagtgtttttaaaatagtggacatataactcatagcaattgtactccatttttcatcttcgtttcatcccaaaaa 21348326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 47826027 - 47825813
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47826027 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 47825928  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg-----gcggcggtgatggatggagaaggaggagagtggtcgcggctca 223  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |     ||||||||||||||||||||||||| ||||||||||||||||     
T  47825927 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgagggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcg 47825828  T
Q  224 ccggcggtggtgtgg 238  Q
    ||||| |||||||||    
T  47825827 ccggcagtggtgtgg 47825813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 54785186 - 54785403
Alignment:
Q  32 caactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 131  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54785186 caacttaagaacatgtaatcatcaaatcagaatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 54785285  T
Q  132 gaga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggc 220  Q
    ||||    |||||||| ||||| ||||||| |||||  |  | || | |||| |      |||||||||||||||||||||||||||||||||| |||||    
T  54785286 gagagatggatggagacagctccctaaactaaagaatcaatacagaagatcgaggaggatgcggcggtgatggatggagaaggaggagagtggttgcggc 54785385  T
Q  221 tcaccggcggtggtgtgg 238  Q
    || |||||||||||||||    
T  54785386 tcgccggcggtggtgtgg 54785403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 21604545 - 21604330
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604545 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21604446  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  21604445 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 21604346  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  21604345 gccggcagtggtgtgg 21604330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 46164366 - 46164581
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164366 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 46164465  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  46164466 gagatggatggagatagctctctaaactaaagaatcaatatagaagatagaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 46164565  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  46164566 gccggcagtggtgtgg 46164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 8432980 - 8433195
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8432980 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 8433079  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    ||||||||||||| |||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  8433080 gagatggatggagatagctttctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 8433179  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  8433180 gccggcagtggtgtgg 8433195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 33753956 - 33754142
Alignment:
Q  29 aatcaactaaagaac--atgtaatcatcaaatcataatcataattgaaggaaattacattcaat--ttcacatt-accttacaagttacaacaattaggg 123  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||  || || ||||   |||||||||||||||    
T  33753956 aatcaactaaagaactcatgtaatcatcaaatcaaaatcataattgaagaaaattacattcaatatttcaatttcacattac---ttacaacaattaggg 33754052  T
Q  124 tttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcg 216  Q
    |||||||| ||||||||||||| ||||| |||||||||||||| |||||||||     || |||||||||||||||||| ||| |||||||||    
T  33754053 tttgtggaaagagatggagataactctcaaaactgaagaaggatgagagtaat---tacgtcggtgatggatggagaagtaggtgagtggtcg 33754142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 38115562 - 38115443
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataatt----gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgt 128  Q
    |||| ||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||    
T  38115562 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgt 38115463  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  38115462 ggagagagatgaagatagct 38115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 14799999 - 14800096
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||| |||||||||| |  ||||||||| |||||||||| |||||| ||||||| ||||||||  || |||||| ||||||||||||||||||    
T  14799999 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 14800096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 5442485 - 5442447
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5442485 ggggtgtattggattaggattttaaaagactattttaat 5442447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 23988291 - 23988253
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23988291 ggggtgtattggattaggattttaaaagactattttaat 23988253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 27769158 - 27769120
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27769158 ggggtgtattggattaggattttaaaagactattttaat 27769120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 32683135 - 32683173
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32683135 ggggtgtattggattaggattttaaaagactattttaat 32683173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 48262169 - 48262131
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48262169 ggggtgtattggattaggattttaaaagactattttaat 48262131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 32323163 - 32323126
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||||||||||||    
T  32323163 gggtgtattggattaggattttaaaagactattttaat 32323126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 23218439 - 23218474
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  23218439 tgggagaagaaaaggatcgcgtttctcacttgttct 23218474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 45143872 - 45143837
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  45143872 tgggagaagaaaaggatcgcgtttctcacttgttct 45143837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 45152641 - 45152606
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  45152641 tgggagaagaaaaggatcgcgtttctcacttgttct 45152606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 37916902 - 37916864
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  37916902 ggggtgtattggattaggattttaagagactattttaat 37916864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 50019285 - 50019247
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  50019285 ggggtgtattggattagaattttaaaagactattttaat 50019247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 51321961 - 51321923
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  51321961 ggggtgtattggattaggattttaaaatactattttaat 51321923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 54342241 - 54342203
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  54342241 ggggtgtattggattagaattttaaaagactattttaat 54342203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 3187581 - 3187646
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttca 94  Q
    |||||| ||||||||||||||||||||||  | ||||| | || ||||||| ||||||||||||||    
T  3187581 aatcaattaaagaacatgtaatcatcaaagaagaatcagatttaaaggaaaatacattcaatttca 3187646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 29649131 - 29649168
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29649131 gggtgaattggattaggattttaaaagactattttaat 29649168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 38234697 - 38234660
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaa 416  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  38234697 ggggtgtattggattaggattttaaaagacttttttaa 38234660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 49833973 - 49834010
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    |||| |||||||||||||||||||||||||||||||||    
T  49833973 gggtatattggattaggattttaaaagactattttaat 49834010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 37827533 - 37827569
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||| |||||||||||||||||||||    
T  37827533 ggtgtattggattagaattttaaaagactattttaat 37827569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 41726198 - 41726162
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||| ||||||||||||||||||||||    
T  41726198 ggtgtattggattatgattttaaaagactattttaat 41726162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 5105036 - 5105001
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||||||||||||||||| |||||    
T  5105036 ggggtgtattggattaggattttaaaagacaatttt 5105001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 48531925 - 48531959
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    |||||| ||||||||||||||||||||||||||||    
T  48531925 tgtatttgattaggattttaaaagactattttaat 48531959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 49500640 - 49500678
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| ||||| |||||||||||||||    
T  49500640 ggggtgtattggattagaattttgaaagactattttaat 49500678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 409
Target Start/End: Original strand, 54852661 - 54852691
Alignment:
Q  379 ggggtgtattggattaggattttaaaagact 409  Q
    |||||||||||||||||||||||||||||||    
T  54852661 ggggtgtattggattaggattttaaaagact 54852691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 16019942 - 16019913
Alignment:
Q  379 ggggtgtattggattaggattttaaaagac 408  Q
    ||||||||||||||||||||||||||||||    
T  16019942 ggggtgtattggattaggattttaaaagac 16019913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 52893583 - 52893349
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893583 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 52893484  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893483 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 52893384  T
Q  201 aggaggagagtggtcgcggctcaccggcggtggtg 235  Q
    |||||||||||| ||||||||||||||||||||||    
T  52893383 aggaggagagtgatcgcggctcaccggcggtggtg 52893349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 2338811 - 2339015
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    |||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338811 aatcaaataaagaacatgtaata--caaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2338908  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2338909 ggagagagatggagataactctctaaactgaagaaggaggagagtaatcgcggcggcagtgatggatggagaaggaggagagtggtcgcggctcaccggc 2339008  T
Q  229 ggtggtg 235  Q
    |||||||    
T  2339009 ggtggtg 2339015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 21239582 - 21239406
Alignment:
Q  6 caggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttac 105  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21239582 caggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttac 21239483  T
Q  106 aagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggc 182  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||    
T  21239482 aagttacaacaattagggtttgtggagagagacggagatagctttctaaactgaagaagaaggagagtgatcgcggc 21239406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 550 - 746
Target Start/End: Original strand, 50724024 - 50724219
Alignment:
Q  550 tcaaattgtaaaataaaaaatggagtatgcgaaaaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaaaggggtgaattaaag 649  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||    
T  50724024 tcaaatcgtaaaacaaaaaatggagtatgcgaaaaactaattctcagaacggtgaagttatttttgacggcggtggcgaactgaaaggggtggattaaag 50724123  T
Q  650 ggagtgtgattacaaacggtgtgagtgtttttaaaatggtggacatataactcacagcaattgtactccattcttcatcttcatttcatcccaaaaa 746  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||| |||||    
T  50724124 ggagtgtgattacaaacactgtgagtgtttttaaaatggtggacatataactcaca-caattgtactccattcttcatctttgtttcatccaaaaaa 50724219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 550 - 746
Target Start/End: Complemental strand, 50788825 - 50788630
Alignment:
Q  550 tcaaattgtaaaataaaaaatggagtatgcgaaaaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaaaggggtgaattaaag 649  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||    
T  50788825 tcaaatcgtaaaacaaaaaatggagtatgcgaaaaactaattctcagaacggtgaagttatttttgacggcggtggcgaactgaaaggggtggattaaag 50788726  T
Q  650 ggagtgtgattacaaacggtgtgagtgtttttaaaatggtggacatataactcacagcaattgtactccattcttcatcttcatttcatcccaaaaa 746  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||    
T  50788725 ggagtgtgattacaaacactgtgagtgtttttaaaatggtggacatataactcaca-caattgtactccattcttcatctttgtttcataccaaaaa 50788630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 9456533 - 9456318
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9456533 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggtttgtggaga 9456434  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    ||||||||||| |||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||| ||||    
T  9456433 gagatggatggagatagctgtctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcagctc 9456334  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  9456333 gccggcagtggtgtgg 9456318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 40923071 - 40922976
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| |||||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  40923071 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 40922976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 2733888 - 2733793
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  2733888 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 2733793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2338761 - 2338803
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaac 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  2338761 gtcaacaggtttaacaattagagttgaaaatcaactaaagaac 2338803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 10728125 - 10728163
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10728125 ggggtgtattggattaggattttaaaagactattttaat 10728163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 11432641 - 11432603
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11432641 ggggtgtattggattaggattttaaaagactattttaat 11432603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 17947314 - 17947276
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17947314 ggggtgtattggattaggattttaaaagactattttaat 17947276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 27239327 - 27239365
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  27239327 ggggtgtattggattaggattttaaaagactattttaat 27239365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 36673260 - 36673298
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36673260 ggggtgtattggattaggattttaaaagactattttaat 36673298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 20833990 - 20833954
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  20833990 ggtgtattggattaggattttaaaagactattttaat 20833954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 37455928 - 37455892
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  37455928 ggtgtattggattaggattttaaaagactattttaat 37455892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 2339033 - 2339068
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  2339033 tgggagaagaaaaggatcgcgtttctcacttgttct 2339068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 21239373 - 21239338
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  21239373 tgggagaagaaaaggatcgcgtttctcacttgttct 21239338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 378 - 417
Target Start/End: Complemental strand, 54629948 - 54629909
Alignment:
Q  378 cggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  54629948 cggggtgtattggattaggattttaaaagacaattttaat 54629909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 10661278 - 10661244
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||    
T  10661278 tgtattggattaggattttaaaagactattttaat 10661244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 18750729 - 18750691
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  18750729 ggggtgtattgaattaggattttaaaagactattttaat 18750691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 45254555 - 45254593
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  45254555 ggggtgtattagattaggattttaaaagactattttaat 45254593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 50761222 - 50761260
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  50761222 ggggtgtattggattaggatattaaaagactattttaat 50761260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 50902418 - 50902456
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  50902418 ggggtgtattggattaagattttaaaagactattttaat 50902456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 52617087 - 52617125
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  52617087 ggggtgtattggattaggattttaaaagacaattttaat 52617125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 48380243 - 48380206
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||| |||||||||||||||||||||    
T  48380243 gggtgtattggattagaattttaaaagactattttaat 48380206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 7319174 - 7319139
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||||||||||||||||| |||||    
T  7319174 ggggtgtattggattaggattttaaaagacaatttt 7319139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 24149837 - 24149872
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||| |||||||||||||||||||    
T  24149837 ggggtgtattggattaagattttaaaagactatttt 24149872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 51736870 - 51736905
Alignment:
Q  382 gtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||| |||||||||||    
T  51736870 gtgtattggattaggattttaaaatactattttaat 51736905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 4329855 - 4329916
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtg--gagagagatggagatagctctctaaac 156  Q
    ||||||||||| |||| | || |||||||||||  ||||||||||||||||||||| |||||    
T  4329855 ttaccttacaatttactagaactagggtttgtggagagagagatggagatagctctttaaac 4329916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 31645364 - 31645402
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  31645364 ggggtgtattggattaagattttaaaagacaattttaat 31645402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 39841555 - 39841593
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  39841555 ggggtgtattgaattatgattttaaaagactattttaat 39841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 40898162 - 40898124
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  40898162 ggggtgtattcgattagaattttaaaagactattttaat 40898124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 44904961 - 44904995
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||| ||||||||||||||||||||||    
T  44904961 tgtattggattaagattttaaaagactattttaat 44904995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 21239428 - 21239391
Alignment:
Q  198 agaaggaggagagtggtcgcggctcaccggcggtggtg 235  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  21239428 agaagaaggagagtgatcgcggctcaccggcggtggtg 21239391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 23752504 - 23752541
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||  |||||||||||||||||||||||||||    
T  23752504 gggtgtatttaattaggattttaaaagactattttaat 23752541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 34483199 - 34483236
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaa 416  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  34483199 ggggtgtattgaattaggattttacaagactattttaa 34483236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 1668229 - 1668023
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668229 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 1668130  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 1668030  T
Q  229 ggtggtg 235  Q
    |||||||    
T  1668029 ggtggtg 1668023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 16658944 - 16658738
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658944 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 16658845  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658844 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 16658745  T
Q  229 ggtggtg 235  Q
    |||||||    
T  16658744 ggtggtg 16658738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 38521221 - 38521424
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38521221 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 38521320  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  38521321 ggagagagatggagataactctctaaact---gaaggaggagagtaatcgcggcggcagtgatggatggagaaggagaagagtggtcgcggctcaccggc 38521417  T
Q  229 ggtggtg 235  Q
    |||||||    
T  38521418 ggtggtg 38521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 6786550 - 6786356
Alignment:
Q  41 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggagagagatg 139  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6786550 aacatgtaatcatcaaatcaaaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgtggagagagatg 6786451  T
Q  140 gagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggt 234  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||    
T  6786450 gagatagctttcaaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggttcgacggcggtggt 6786356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 22432291 - 22432506
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432291 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 22432390  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  22432391 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 22432490  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  22432491 gccggcagtggtgtgg 22432506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 29182575 - 29182790
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182575 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29182674  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  29182675 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 29182774  T
Q  223 accggcggtggtgtgg 238  Q
     || || |||||||||    
T  29182775 gccagcagtggtgtgg 29182790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 27576888 - 27576667
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||| ||||| |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576888 actaaagaacatgtaatcatcaaatcagaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 27576789  T
Q  128 tggagagaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcg 216  Q
    ||||||||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||    
T  27576788 tggagagagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcg 27576689  T
Q  217 cggctcaccggcggtggtgtgg 238  Q
    |||||| ||||| |||||||||    
T  27576688 cggctcgccggcagtggtgtgg 27576667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 774680 - 774896
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  774680 actaaagaacatgtaattatcatatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 774779  T
Q  133 a--ga--gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggct 221  Q
    |  ||  |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||||||||||||||||| |    
T  774780 aaggatggatggagatagctctctaaactaaagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggtt 774879  T
Q  222 caccggcggtggtgtgg 238  Q
    | |||||||||||||||    
T  774880 cgccggcggtggtgtgg 774896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 22014960 - 22014860
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22014960 aaatcaactaaagaatatgtaatcatcaaacaataatcataattgaaggaaattacattcaatttcacattaacttacaagttacaacaattagggtttg 22014861  T
Q  128 t 128  Q
    |    
T  22014860 t 22014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 43916225 - 43916091
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||| |||||| |||| | |||  | ||||| | ||||||||||||||||| || |||||||| |||||||| |||||||||| ||||||| |    
T  43916225 aatcaactaaataacatgcaatcgttaaagaagaatcagatttgaaggaaattacattaaaattcacatttccttacaatttacaacaatcagggtttat 43916126  T
Q  129 ggagagagatggagatagctctctaaactgaagaa 163  Q
    |||||||||||||||||||||||||||||||||||    
T  43916125 ggagagagatggagatagctctctaaactgaagaa 43916091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 11472357 - 11472476
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataat----tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtt---tgt 128  Q
    |||||||||||||||||||| |||| |||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||    
T  11472357 taaagaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttttctgt 11472456  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  11472457 ggagagagatgaagatagct 11472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 42808784 - 42808687
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||||| |  ||||||||| |||||||||| |||||||||||||| |||||||| ||| |||||| ||||||||||||||||||    
T  42808784 taaagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaccttgcaatttacaagaattagggtttgtggaga 42808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 22014802 - 22014748
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22014802 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 22014748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 780493 - 780550
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  780493 gcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgtgg 780550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 33360489 - 33360397
Alignment:
Q  41 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||| |  ||||||||| |||||||||| |||||||||||||| |||| ||| ||| |||| | ||||||||||||||||||    
T  33360489 aacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaacttgcaatttaccagaattagggtttgtggaga 33360397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 780362 - 780417
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 89  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  780362 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 18068536 - 18068479
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  18068536 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtgg 18068479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 34212961 - 34213020
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  34212961 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagctctttaaac 34213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 14781248 - 14781286
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14781248 ggggtgtattggattaggattttaaaagactattttaat 14781286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 18957834 - 18957872
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18957834 ggggtgtattggattaggattttaaaagactattttaat 18957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 32498985 - 32498947
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32498985 ggggtgtattggattaggattttaaaagactattttaat 32498947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 34893452 - 34893414
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34893452 ggggtgtattggattaggattttaaaagactattttaat 34893414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 37857971 - 37857933
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37857971 ggggtgtattggattaggattttaaaagactattttaat 37857933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 44724898 - 44724935
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44724898 gggtgtattggattaggattttaaaagactattttaat 44724935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 9287608 - 9287644
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  9287608 ggtgtattggattaggattttaaaagactattttaat 9287644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 38521442 - 38521477
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  38521442 tgggagaagaaaaggatcgcgtttctcacttgttct 38521477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 4030443 - 4030481
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  4030443 ggggtgtattagattaggattttaaaagactattttaat 4030481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 18305077 - 18305115
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  18305077 ggggtgtattggattaggattttaaaagacaattttaat 18305115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 19716983 - 19717017
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||    
T  19716983 tgtattggattaggattttaaaagactattttaat 19717017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 42304745 - 42304779
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||    
T  42304745 tgtattggattaggattttaaaagactattttaat 42304779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 267
Target Start/End: Complemental strand, 16658720 - 16658689
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttg 267  Q
    ||||||||||||||||||||||||||||||||    
T  16658720 tgggagaagaaaaggatcgcgtttctcacttg 16658689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 10294516 - 10294550
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||| |||||||||||    
T  10294516 tgtattggattaggattttaaaacactattttaat 10294550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 16365371 - 16365333
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  16365371 ggggtgtattgaattaggattttaaaagacaattttaat 16365333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 20831080 - 20831114
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattt 413  Q
    ||||||||||| |||||||||||||||||||||||    
T  20831080 ggggtgtattgaattaggattttaaaagactattt 20831114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 39466634 - 39466672
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  39466634 ggggtgtattggattaagattttaaaagattattttaat 39466672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 3935367 - 3935573
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935367 aatcaactaaagaacatgtaatcatcaaattataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 3935466  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935467 ggagagagatggagatagctctctaaactgaagaagtaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 3935566  T
Q  229 ggtggtg 235  Q
    |||||||    
T  3935567 ggtggtg 3935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 38978382 - 38978570
Alignment:
Q  43 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggag 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38978382 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgtggagagagatggag 38978481  T
Q  143 atagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggt 231  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38978482 atagctttctaaactgaagaaggaggagagtaattgcggcggcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggt 38978570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 25697567 - 25697782
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25697567 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 25697666  T
Q  134 ga----gatggagatagctctctaaactgaagaa-----ggaggagagtaatcgcg--gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||       || ||| | |  | |  ||||||||||||||||||||||||| ||||||||||||||||    
T  25697667 gagatggatggagatagctctctaaactaaagaatctatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 25697766  T
Q  223 accggcggtggtgtgg 238  Q
     || || |||||||||    
T  25697767 gccagcagtggtgtgg 25697782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 32339669 - 32339602
Alignment:
Q  28 aaatcaactaaagaac--atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttc 93  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  32339669 aaatcaactaaagaactcatgtaatcatcaaatcagaatcataattgaagaaaattacattcaatttc 32339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 214625 - 214663
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  214625 ggggtgtattggattaggattttaaaagactattttaat 214663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 380004 - 379966
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  380004 ggggtgtattggattaggattttaaaagactattttaat 379966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 10658524 - 10658486
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10658524 ggggtgtattggattaggattttaaaagactattttaat 10658486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 18178366 - 18178328
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  18178366 ggggtgtattggattaggattttaaaagactattttaat 18178328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 25289249 - 25289211
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25289249 ggggtgtattggattaggattttaaaagactattttaat 25289211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 26789879 - 26789841
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26789879 ggggtgtattggattaggattttaaaagactattttaat 26789841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 28845672 - 28845634
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28845672 ggggtgtattggattaggattttaaaagactattttaat 28845634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 3464681 - 3464642
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaatt 418  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  3464681 ggggtgtattggattaggattttacaagactattttaatt 3464642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 20156344 - 20156379
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  20156344 ggggtgtattggattaggattttaaaagactatttt 20156379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 38978592 - 38978627
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  38978592 tgggagaagaaaaggatcgcgtttctcacttgttct 38978627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 30239161 - 30239199
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  30239161 ggggtgtattggattatgattttaaaagactattttaat 30239199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 33136691 - 33136653
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  33136691 ggggtgtattggattaggattttaaaagacaattttaat 33136653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 8485531 - 8485572
Alignment:
Q  109 ttacaacaattagggtttgtggagagagatggagatagctct 150  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  8485531 ttacaagaattagggtttgtggagagagatagagatagctct 8485572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 20917079 - 20917027
Alignment:
Q  104 acaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 156  Q
    |||| |||||| || || ||||||||||||||||||||||||||||| |||||    
T  20917079 acaatttacaagaactaaggtttgtggagagagatggagatagctctttaaac 20917027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 43079576 - 43079540
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||| |||||||||||||||||||||    
T  43079576 ggtgtattggattagaattttaaaagactattttaat 43079540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 267
Target Start/End: Original strand, 3935591 - 3935622
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttg 267  Q
    ||||||||||||||||||||||||||||||||    
T  3935591 tgggagaagaaaaggatcgcgtttctcacttg 3935622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 2374067 - 2374033
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    ||||||| |||||||||||||||||||||||||||    
T  2374067 tgtattgtattaggattttaaaagactattttaat 2374033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 8485607 - 8485640
Alignment:
Q  187 gtgatggatggagaaggaggagagtggtcgcggc 220  Q
    |||||||||||||||||||| |||||||||||||    
T  8485607 gtgatggatggagaaggaggtgagtggtcgcggc 8485640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 13832669 - 13832706
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||  |||||||||||||||||||||||||||    
T  13832669 gggtgtattcaattaggattttaaaagactattttaat 13832706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 2585 - 2382
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2585 aatcaactaaagaacatgtaatcatcaaatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2492  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2491 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 2392  T
Q  229 ggtggtgtgg 238  Q
    ||||||||||    
T  2391 ggtggtgtgg 2382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 2359 - 2324
Alignment:
Q  236 tgggagaagaaaaggatcgcgtttctcacttgttct 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  2359 tgggagaagaaaaggatcgcgtttctcacttgttct 2324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 182; Significance: 6e-98; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 11163 - 11367
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11163 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattaggatttg 11262  T
Q  128 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccgg 227  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  11263 tggagagagatggagatagctctctaaact---gaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggaaagtggtcgcggctcaccgt 11359  T
Q  228 cggtggtg 235  Q
    ||||||||    
T  11360 cggtggtg 11367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 1e-64; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 3174289 - 3174068
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174289 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 3174190  T
Q  128 tggagagaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcg 216  Q
    ||||||||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||    
T  3174189 tggagagagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcg 3174090  T
Q  217 cggctcaccggcggtggtgtgg 238  Q
    |||||| ||||| |||||||||    
T  3174089 cggctcgccggcagtggtgtgg 3174068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 32863763 - 32863552
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863763 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 32863664  T
Q  134 gagatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccg 226  Q
      |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| |||||||||||||||| |||    
T  32863663 tggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccg 32863564  T
Q  227 gcggtggtgtgg 238  Q
    || |||||||||    
T  32863563 gcagtggtgtgg 32863552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 10572822 - 10572607
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572822 actaaagaacatgtaatcatcaaatcagaatcacaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 10572723  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  10572722 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 10572623  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  10572622 gccggcagtggtgtgg 10572607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 19209107 - 19209241
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||| ||| || ||||| | |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |    
T  19209107 aatcaactaaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaatttcacgttaccttacgatttacaacaattagggtttat 19209206  T
Q  129 ggagagagatggagatagctctctaaactgaagaa 163  Q
    ||||||||||| |||||||||| ||||||||||||    
T  19209207 ggagagagatgcagatagctctttaaactgaagaa 19209241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 23738006 - 23737872
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||| |||  | ||||| | |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| |    
T  23738006 aatcaactaaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaatttcatgttaccttacaatttacaacaattagggtttat 23737907  T
Q  129 ggagagagatggagatagctctctaaactgaagaa 163  Q
    ||||||||||| |||||||||| ||||||||||||    
T  23737906 ggagagagatgcagatagctctttaaactgaagaa 23737872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 43300299 - 43300188
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||| ||||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||     
T  43300299 aaatcaacaaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaattagggttta 43300200  T
Q  128 tggagagagatg 139  Q
    ||||||||||||    
T  43300199 tggagagagatg 43300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 41958593 - 41958717
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||||||| ||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||  || | ||||||||||||||||     
T  41958593 aaatcaactaaa-aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggttta 41958691  T
Q  128 tggagagagatggagatagctctctaa 154  Q
    ||||||||||| |||||| ||||||||    
T  41958692 tggagagagat-gagataactctctaa 41958717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 18739449 - 18739581
Alignment:
Q  109 ttacaacaattagggtttgtggagagagatggag----atagctctctaaactgaagaaggag---gagagtaatcgcggcggcggtgatggatggagaa 201  Q
    |||||| |||||||||||||||||||||||| ||    | ||||||||||| |||||||| ||   ||||||||||||||   |||||||||||||||||    
T  18739449 ttacaataattagggtttgtggagagagatgaaggaagaaagctctctaaattgaagaagaagaaggagagtaatcgcgg---cggtgatggatggagaa 18739545  T
Q  202 ggaggagagtgg--tcgcggctcaccggcggtggtg 235  Q
     |||||||||||  ||||||||||||||||||||||    
T  18739546 agaggagagtggtctcgcggctcaccggcggtggtg 18739581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 18739382 - 18739453
Alignment:
Q  13 aacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattaca 84  Q
    ||||||||| |||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  18739382 aacaattagggttggaaatcaactaaataacatgtaatcatcaaatcagaatcataattgaaggaaattaca 18739453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 22273148 - 22273243
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  22273148 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 22273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 4239580 - 4239618
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  4239580 ggggtgtattggattaggattttaaaagactattttaat 4239618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 13717189 - 13717151
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13717189 ggggtgtattggattaggattttaaaagactattttaat 13717151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 13927027 - 13926989
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13927027 ggggtgtattggattaggattttaaaagactattttaat 13926989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 13999214 - 13999252
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  13999214 ggggtgtattggattaggattttaaaagactattttaat 13999252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 40012817 - 40012855
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  40012817 ggggtgtattggattaggattttaaaagactattttaat 40012855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 4549364 - 4549402
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  4549364 ggggtgtattcgattaggattttaaaagactattttaat 4549402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 39853446 - 39853408
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  39853446 ggggtgtattggattagaattttaaaagactattttaat 39853408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 5950506 - 5950470
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||| ||||||||||||||||||||||    
T  5950506 ggtgtattggattatgattttaaaagactattttaat 5950470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 7947134 - 7947170
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttta 415  Q
    ||||||||||| |||||||||||||||||||||||||    
T  7947134 ggggtgtattgaattaggattttaaaagactatttta 7947170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 415
Target Start/End: Original strand, 28593000 - 28593036
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttta 415  Q
    |||||||||||||||||||||||||||||| ||||||    
T  28593000 ggggtgtattggattaggattttaaaagacaatttta 28593036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 552 - 634
Target Start/End: Original strand, 5527370 - 5527452
Alignment:
Q  552 aaattgtaaaataaaaaatggagtatgcgaaaaactaattctcagaagggtggaggtatttttgacggcggtggcgaactgaa 634  Q
    |||| |||||| |||||||||| |   ||||||||| | |||||| | |||||||| || || ||||||||||||||||||||    
T  5527370 aaatcgtaaaacaaaaaatggatttctcgaaaaactgaatctcagtatggtggaggcatcttggacggcggtggcgaactgaa 5527452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 37014951 - 37014913
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  37014951 ggggtgtattggattagaattttaaaagattattttaat 37014913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 1459300 - 1459333
Alignment:
Q  384 gtattggattaggattttaaaagactattttaat 417  Q
    |||||| |||||||||||||||||||||||||||    
T  1459300 gtattgaattaggattttaaaagactattttaat 1459333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 6472244 - 6472459
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472244 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 6472343  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  6472344 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 6472443  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  6472444 gccggcagtggtgtgg 6472459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 9371926 - 9371711
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371926 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 9371827  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  9371826 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 9371727  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  9371726 gccggcagtggtgtgg 9371711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 21358022 - 21358155
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358022 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21358121  T
Q  134 ga----gatggagatagctctctaaactgaagaa 163  Q
    ||    |||||||||||||||||||||| |||||    
T  21358122 gagatggatggagatagctctctaaactaaagaa 21358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 35012978 - 35013190
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagaga-- 135  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35012978 aagaacatgtaattatcaaatcagaatcaggattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagaga 35013077  T
Q  136 --gatggagatagctctctaaactgaagaaggaggagagta-atcgcg-------gcggcggtgatggatggagaaggaggagagtggtcgcggctcacc 225  Q
      |||||||||||||||||||||| |||||  |  | || | || | |       ||||||||||||||||||||||||| |||||||||||||| | ||    
T  35013078 tggatggagatagctctctaaactaaagaatcaatacagaagattgagggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggcccgcc 35013177  T
Q  226 ggcggtggtgtgg 238  Q
    ||| |||||||||    
T  35013178 ggcagtggtgtgg 35013190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 44660434 - 44660309
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||||||||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||     
T  44660434 aaatcaactaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaattagggttta 44660335  T
Q  128 tggagagagatggagatagctctctaa 154  Q
    ||||||||||| |||||| ||||||||    
T  44660334 tggagagagat-gagataactctctaa 44660309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 31419367 - 31419280
Alignment:
Q  46 gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||| |  ||||||||| |||||||||| |||||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  31419367 gtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 31419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 3024018 - 3023980
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3024018 ggggtgtattggattaggattttaaaagactattttaat 3023980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 21068452 - 21068414
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21068452 ggggtgtattggattaggattttaaaagactattttaat 21068414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 23102385 - 23102347
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23102385 ggggtgtattggattaggattttaaaagactattttaat 23102347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 29894051 - 29894013
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29894051 ggggtgtattggattaggattttaaaagactattttaat 29894013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 39785192 - 39785154
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  39785192 ggggtgtattggattaggattttaaaagactattttaat 39785154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 29613906 - 29613942
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||    
T  29613906 ggtgtattggattaggattttaaaagactattttaat 29613942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 382 - 417
Target Start/End: Original strand, 37971509 - 37971544
Alignment:
Q  382 gtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||||||||||    
T  37971509 gtgtattggattaggattttaaaagactattttaat 37971544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 510742 - 510704
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  510742 ggggtgtattggattgggattttaaaagactattttaat 510704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 9881401 - 9881439
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  9881401 ggggtgtattggattaggattttaaaagacaattttaat 9881439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 12003038 - 12003099
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtgg--agagagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  12003038 ttaccttacaatttacaagaattagggtgtgtggaaagagagatggagatagctctttaaac 12003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 18839388 - 18839350
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  18839388 ggggtgtattggattaggattttaaaagattattttaat 18839350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 28034232 - 28034270
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  28034232 ggggtgtattgaattaggattttaaaagactattttaat 28034270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 28343404 - 28343366
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  28343404 ggggtgtattggattgggattttaaaagactattttaat 28343366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 30823681 - 30823643
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30823681 ggggtgtattgaattaggattttaaaagactattttaat 30823643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 37328921 - 37328883
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  37328921 ggggtgtattggattagaattttaaaagactattttaat 37328883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 39029147 - 39029109
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  39029147 ggggtgtattggattaggattttaaaagattattttaat 39029109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 40459833 - 40459871
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  40459833 ggggtgtattggattagaattttaaaagactattttaat 40459871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 382 - 416
Target Start/End: Original strand, 46035452 - 46035486
Alignment:
Q  382 gtgtattggattaggattttaaaagactattttaa 416  Q
    |||||||||||||||||||||||||||||||||||    
T  46035452 gtgtattggattaggattttaaaagactattttaa 46035486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 48136362 - 48136400
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  48136362 ggggtatattggattaggattttaaaagactattttaat 48136400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 417
Target Start/End: Complemental strand, 12741467 - 12741430
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12741467 gggtgtattggattaagattttaaaagactattttaat 12741430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 46405302 - 46405339
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  46405302 gggtgtattagattaggattttaaaagactattttaat 46405339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 411
Target Start/End: Original strand, 33891384 - 33891416
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactat 411  Q
    |||||||||||||||||||||||||||||||||    
T  33891384 ggggtgtattggattaggattttaaaagactat 33891416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 3635222 - 3635187
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||||||||||||||||| |||||    
T  3635222 ggggtgtattggattaggattttaaaagacaatttt 3635187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 417
Target Start/End: Complemental strand, 32884850 - 32884815
Alignment:
Q  382 gtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||| ||||||||||||||||||||||    
T  32884850 gtgtattggattaagattttaaaagactattttaat 32884815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Complemental strand, 7994246 - 7994212
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||| |||||||||    
T  7994246 tgtattggattaggattttaaaagagtattttaat 7994212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 12893108 - 12893142
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattt 413  Q
    ||||||||||||||||||||||||||| |||||||    
T  12893108 ggggtgtattggattaggattttaaaatactattt 12893142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 26183151 - 26183121
Alignment:
Q  379 ggggtgtattggattaggattttaaaagact 409  Q
    |||||||||||||||||||||||||||||||    
T  26183151 ggggtgtattggattaggattttaaaagact 26183121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 33383698 - 33383668
Alignment:
Q  379 ggggtgtattggattaggattttaaaagact 409  Q
    |||||||||||||||||||||||||||||||    
T  33383698 ggggtgtattggattaggattttaaaagact 33383668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 47067784 - 47067746
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| ||||| |||||||||||||||||||||    
T  47067784 ggggtgtattgaattagaattttaaaagactattttaat 47067746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 3e-56; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 29599251 - 29599466
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599251 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29599350  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  29599351 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 29599450  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  29599451 gccggcagtggtgtgg 29599466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 324798 - 324583
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  324798 actaaagaacatctaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgtggaga 324699  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  324698 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 324599  T
Q  223 accggcggtggtgtgg 238  Q
     ||||| |||||||||    
T  324598 gccggcagtggtgtgg 324583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 17480981 - 17481109
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||  |||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  17480981 aaatcaatcaaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacattcaatttcacattaccttacaatttacaagaattaggatttg 17481080  T
Q  128 tggagagagatggagatagctctctaaac 156  Q
    ||||||||||||||||||||||| |||||    
T  17481081 tggagagagatggagatagctctttaaac 17481109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 34 - 235
Target Start/End: Complemental strand, 26355125 - 26354912
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26355125 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggag 26355026  T
Q  133 a--ga--gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggct 221  Q
    |  ||  ||||||||||||||||| ||||  ||||  |  | || | || | |      ||||||||||||||||||||||||||||||||||||||| |    
T  26355025 aaggatggatggagatagctctctgaactatagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggtt 26354926  T
Q  222 caccggcggtggtg 235  Q
    | ||||||||||||    
T  26354925 cgccggcggtggtg 26354912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 48184352 - 48184225
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48184352 actaaagaacatgtaatcatcaaatcagaat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 48184259  T
Q  134 gaga----tggagatagctctctaaactgaagaa 163  Q
    ||||    |||||||||||||||||||| |||||    
T  48184258 gagatggatggagatagctctctaaactaaagaa 48184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 26014586 - 26014504
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaaca 116  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014586 actaaataacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 44 - 238
Target Start/End: Original strand, 6165049 - 6165245
Alignment:
Q  44 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgtggagagagatgg 140  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||     
T  6165049 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgttgtggagagagatg- 6165147  T
Q  141 agatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtgg 233  Q
           ||||||||||||||||     | || | || | |      || |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6165148 -------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtgg 6165240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 16764520 - 16764621
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16764520 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 16764619  T
Q  127 gt 128  Q
    ||    
T  16764620 gt 16764621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 10801550 - 10801650
Alignment:
Q  28 aaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtt 125  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10801550 aaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtt 10801649  T
Q  126 t 126  Q
    |    
T  10801650 t 10801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 16764681 - 16764733
Alignment:
Q  186 ggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  16764681 ggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 16764733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 10801711 - 10801765
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  10801711 gcggtgatggatggagaaggaggagagtggtcgcggctcacaagcggtggtgtgg 10801765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 26014487 - 26014430
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| || || |||||||||    
T  26014487 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccagcagtggtgtgg 26014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 6313670 - 6313632
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6313670 ggggtgtattggattaggattttaaaagactattttaat 6313632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 25613186 - 25613148
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25613186 ggggtgtattggattaggattttaaaagactattttaat 25613148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 28386558 - 28386596
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28386558 ggggtgtattggattaggattttaaaagactattttaat 28386596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 29395538 - 29395576
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29395538 ggggtgtattggattaggattttaaaagactattttaat 29395576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 46329062 - 46329024
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  46329062 ggggtgtattggattaggattttaaaagactattttaat 46329024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 48176646 - 48176684
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  48176646 ggggtgtattggattaggattttaaaagactattttaat 48176684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 48184200 - 48184143
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    |||||||||||||||||||||| || |||||||||||||||  ||||| |||||||||    
T  48184200 gcggcggtgatggatggagaagaagaagagtggtcgcggcttgccggcagtggtgtgg 48184143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 15835410 - 15835374
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttta 415  Q
    |||||||||||||||||||||||||||||||||||||    
T  15835410 ggggtgtattggattaggattttaaaagactatttta 15835374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 1923096 - 1923131
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  1923096 ggggtgtattggattaggattttaaaagactatttt 1923131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 25830360 - 25830398
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  25830360 ggggtgtattgaattaggattttaaaagactattttaat 25830398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 49232078 - 49232040
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  49232078 ggggtgtattggattaggattttaaaagacaattttaat 49232040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 51702688 - 51702650
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  51702688 ggggtgtataggattaggattttaaaagactattttaat 51702650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 48199041 - 48199004
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaa 416  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48199041 ggggtgtattggattaggattttaaaagacttttttaa 48199004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 48207624 - 48207587
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaa 416  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  48207624 ggggtgtattggattaggattttaaaagacttttttaa 48207587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 45273653 - 45273617
Alignment:
Q  381 ggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||| |||||||||    
T  45273653 ggtgtattggattaggattttaaaagattattttaat 45273617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 49197761 - 49197796
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||||||||||||||||| |||||    
T  49197761 ggggtgtattggattaggattttaaaagacaatttt 49197796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 9321619 - 9321657
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  9321619 ggggtgtattgaattgggattttaaaagactattttaat 9321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 409
Target Start/End: Complemental strand, 18799443 - 18799413
Alignment:
Q  379 ggggtgtattggattaggattttaaaagact 409  Q
    |||||||||||||||||||||||||||||||    
T  18799443 ggggtgtattggattaggattttaaaagact 18799413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 20111682 - 20111720
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||| ||||| ||||||||||||||||||||||    
T  20111682 ggggtgtatttgattacgattttaaaagactattttaat 20111720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 38535261 - 38535295
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||| |||||||||    
T  38535261 tgtattggattaggattttaaaagattattttaat 38535295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 417
Target Start/End: Original strand, 38557479 - 38557513
Alignment:
Q  383 tgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||| |||||||||    
T  38557479 tgtattggattaggattttaaaagattattttaat 38557513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 32397352 - 32397218
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattc-aatttcacattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32397352 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 32397253  T
Q  133 a--ga--gatggagatagctctctaaactgaagaa 163  Q
    |  ||  |||||||||||||||||||||| |||||    
T  32397252 aaggatggatggagatagctctctaaactaaagaa 32397218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 9303095 - 9302995
Alignment:
Q  62 aatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaag 161  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  9303095 aatcaaaattgaaggaaattacattcaatttcacattacctttcaagtt-taacaattagggtttgtggagagagatggagataactctctgaactggag 9302997  T
Q  162 aa 163  Q
    ||    
T  9302996 aa 9302995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 7171142 - 7171047
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  7171142 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 7171047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 14654645 - 14654704
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  14654645 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagctctttaaac 14654704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 32397193 - 32397136
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    ||||||||||||||||||| |||||||||||||||| || || |||||||||||||||    
T  32397193 gcggcggtgatggatggagcaggaggagagtggtcggggatcgccggcggtggtgtgg 32397136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 7498194 - 7498156
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7498194 ggggtgtattggattaggattttaaaagactattttaat 7498156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 30384172 - 30384210
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30384172 ggggtgtattggattaggattttaaaagactattttaat 30384210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 31068514 - 31068476
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31068514 ggggtgtattggattaggattttaaaagactattttaat 31068476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 31896731 - 31896693
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31896731 ggggtgtattggattaggattttaaaagactattttaat 31896693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 16497344 - 16497392
Alignment:
Q  190 atggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||    
T  16497344 atggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtgg 16497392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 4199587 - 4199625
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  4199587 ggggtgtattggattaggattttaaaacactattttaat 4199625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 32397808 - 32397747
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggaga--gagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| || |||||||||||||||  ||||||||||||||||| |||||    
T  32397808 ttaccttacaatttacaagaactagggtttgtggagagagagatggagatagctctttaaac 32397747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Complemental strand, 7104618 - 7104581
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaa 416  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  7104618 ggggtgtattggattaggattttaaaagacttttttaa 7104581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 416
Target Start/End: Original strand, 8790012 - 8790049
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaa 416  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  8790012 ggggtgtattggattaggattttaaaagacttttttaa 8790049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 9302967 - 9302935
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcg 216  Q
    |||||||||||||||||||||||||||||||||    
T  9302967 gcggtgatggatggagaaggaggagagtggtcg 9302935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Complemental strand, 23929409 - 23929374
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||||||||||||||||| |||||    
T  23929409 ggggtgtattggattaggattttaaaagacaatttt 23929374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 14261552 - 14261589
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  14261552 gggtgtattggattatgattttaaaagacaattttaat 14261589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 2989 - 2776
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt-- 124  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||      
T  2989 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 2890  T
Q  125 -ttgtggagagagatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcg 216  Q
     |||||||||||||||        ||||||||||||||||     | || | || | |      || |||||||||||||||||||||||||||||||||    
T  2889 gttgtggagagagatg--------tctctaaactgaagaatcgaaacagaagatggaggagtatgcagcggtgatggatggagaaggaggagagtggtcg 2798  T
Q  217 cggctcaccggcggtggtgtgg 238  Q
    ||||||||| ||||||||||||    
T  2797 cggctcaccagcggtggtgtgg 2776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 36401 - 36438
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36401 gggtgtattggattaggattttaaaagactattttaat 36438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1084 (Bit Score: 68; Significance: 6e-30; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 1324 - 1208
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataatt----gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 131  Q
    |||| ||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |     
T  1324 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagtgtttgttgt 1225  T
Q  132 gagagatggagatagct 148  Q
    |||||||| ||||||||    
T  1224 gagagatgaagatagct 1208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 8366 - 8467
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8366 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 8465  T
Q  127 gt 128  Q
    ||    
T  8466 gt 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 8528 - 8579
Alignment:
Q  187 gtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggtgtgg 238  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8528 gtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 8579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 924 - 1067
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattga----aggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgt 128  Q
    |||||||||| ||||||||| |||| |||||||||| |    |||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||    
T  924 taaagaacatataatcatcatatcagaatcataattaattaaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgt 1023  T
Q  129 ggagagagatggagatagct--ctctaaactgaagaaggaggag 170  Q
    ||||||||||| ||||||||   ||||||| ||||| |||||||    
T  1024 ggagagagatgaagatagctgaatctaaacagaagatggaggag 1067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 39728 - 39631
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||| |||||||||| |  ||||||||| |||||||||| |||||| ||||||| ||||||||  || |||||| ||||||||||||||||||    
T  39728 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 39631  T

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Target: scaffold0940 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0940
Description:

Target: scaffold0940; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 3574 - 3612
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3574 ggggtgtattggattaggattttaaaagactattttaat 3612  T

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Target: scaffold0492 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 415
Target Start/End: Complemental strand, 12130 - 12094
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttta 415  Q
    |||||||||||||||||||||||||||||||||||||    
T  12130 ggggtgtattggattaggattttaaaagactatttta 12094  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 57170 - 57208
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  57170 ggggtgtattggattagaattttaaaagactattttaat 57208  T

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Target: scaffold0110 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 412
Target Start/End: Original strand, 38750 - 38783
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatt 412  Q
    ||||||||||||||||||||||||||||||||||    
T  38750 ggggtgtattggattaggattttaaaagactatt 38783  T

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Target: scaffold0287 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 10863 - 10898
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactatttt 414  Q
    |||||||||||||||||||||||||||||| |||||    
T  10863 ggggtgtattggattaggattttaaaagacaatttt 10898  T

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Target: scaffold1521 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold1521
Description:

Target: scaffold1521; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 1292 - 1330
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  1292 ggggagtattgaattaggattttaaaagactattttaat 1330  T

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Target: scaffold0383 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 16147 - 16185
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  16147 ggggagtattgaattaggattttaaaagactattttaat 16185  T

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Target: scaffold0152 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 379 - 417
Target Start/End: Complemental strand, 29427 - 29389
Alignment:
Q  379 ggggtgtattggattaggattttaaaagactattttaat 417  Q
    |||| |||||| |||||||||||||||||||||||||||    
T  29427 ggggagtattgaattaggattttaaaagactattttaat 29389  T

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Target: scaffold0839 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0839
Description:

Target: scaffold0839; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 3114 - 3151
Alignment:
Q  380 gggtgtattggattaggattttaaaagactattttaat 417  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  3114 gggtgtattagattaagattttaaaagactattttaat 3151  T

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