View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_10 (Length: 427)
Name: NF1402_low_10
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 8392865 - 8392491
Alignment:
| Q |
30 |
cttataattatttatgtgaccaaaatgagttggtttctggagttttgtgaaatggtccccatcctaatgaacagattgtcaaatacaacatcacatggaa |
129 |
Q |
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| T |
8392865 |
cttataattatttatgtgaccaaaatgagttggtttctggagttttgtgaaatggtccccatcctaatgaacagattgtcaaatacaacatcacatggaa |
8392766 |
T |
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| Q |
130 |
tgtagnnnnnnn-gttaagaattttattgtgaggaaaatttacaaaaggataaaaacttggagggttannnnnnnnnnnnnnnaatcaaagaaaattctt |
228 |
Q |
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| T |
8392765 |
tgtagaaaaaaaagttaagaattttattgtgaggaaaatttacaaaaggataaaaacttggagggttatttttatttttattttatcaaagaaaattctt |
8392666 |
T |
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| Q |
229 |
tattctttatccaacttttgtgcagataaattcagagagatagagatgtttctgtaaatggaagaaggaggaaaaatatattaatggatgagattatctc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8392665 |
tattctttatccaacttttgtgcagataaattcagagagatagagatgtttctgaaaatggaagaaggaggaaaaatatattaatggatgagattatctc |
8392566 |
T |
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| Q |
329 |
actaaaaatctcgtgttctattttgtttgtgtaannnnnnnngcagtatagttctaaatttagcatgtacagtat |
403 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8392565 |
actaaaaatctcgtgttctattttgtttgtgtaattttttttgcagtatagttctaaatttagcatgtacagtat |
8392491 |
T |
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