View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_low_14 (Length: 371)

Name: NF1402_low_14
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_low_14
NF1402_low_14
[»] chr4 (11 HSPs)
chr4 (18-366)||(11676007-11676351)
chr4 (18-366)||(11684286-11684630)
chr4 (222-367)||(11697722-11697867)
chr4 (18-147)||(11701900-11702029)
chr4 (18-137)||(11696103-11696222)
chr4 (18-143)||(11797944-11798069)
chr4 (18-126)||(11779082-11779190)
chr4 (243-367)||(11707451-11707575)
chr4 (275-367)||(11787793-11787885)
chr4 (275-367)||(11799960-11800052)
chr4 (249-367)||(11783938-11784054)
[»] scaffold0294 (2 HSPs)
scaffold0294 (18-126)||(16545-16653)
scaffold0294 (243-367)||(19515-19639)


Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 11676007 - 11676351
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11676007 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcata 11676106  T
Q  118 ctcgcttctttcatttatatcatggtcagtatttttgttacttaatatgacgtctaaagacttgaatttttcttcttctgtacatattagtattagatag 217  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  11676107 ctcgcttctctcatttatatcttggtcagtattgttgttacttaatatgacgtccaaagacttgaatttttcttcttctgtacatactagtattagatag 11676206  T
Q  218 acagatagctctattggtttgttgctttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctc 317  Q
    |||||||||||||||||||| ||| |||||||||||    ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  11676207 acagatagctctattggtttattgttttgatgttgg----tggcttaatataatttacagggactaggcttgttaacattatcagctatgcttccttctc 11676302  T
Q  318 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11676303 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 11676351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 11684286 - 11684630
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11684286 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggacgctatcgcacaatcata 11684385  T
Q  118 ctcgcttctttcatttatatcatggtcagtatttttgttacttaatatgacgtctaaagacttgaatttttcttcttctgtacatattagtattagatag 217  Q
    ||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  11684386 ctcgcttctctcatttatatcttggtcagtattgttgttacttaatatgacgtccaaagacttgaatttttcttcttctgtacatactagtattagatag 11684485  T
Q  218 acagatagctctattggtttgttgctttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctc 317  Q
    |||||||||||||||||||| ||| |||||||||||    ||||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||    
T  11684486 acagatagctctattggtttattgttttgatgttgg----tggcttaatataatttacagggactaggcttgttaacattatcagctatgcttccttctc 11684581  T
Q  318 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11684582 tcacatcctgttctcctgagtcacaagtaatcttatttttcatctcact 11684630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 222 - 367
Target Start/End: Original strand, 11697722 - 11697867
Alignment:
Q  222 atagctctattggtttgttgctttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcac 321  Q
    |||| |||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11697722 atagttctattggcttattggtttgatgttggtcattggcttaatatgaattacagggactaggcttgttaacattatcagctatgcttccttcactcac 11697821  T
Q  322 atcctgttctcctgagtcacaagtaatcttatttttcatctcactc 367  Q
    ||| |||||| || | ||||||||||||||||| ||||||||||||    
T  11697822 atcttgttctactcaatcacaagtaatcttattcttcatctcactc 11697867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 11701900 - 11702029
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||| ||||||| ||| |||||||||||   |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  11701900 tgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttaggtgcttttgttgctgattcttttcttggacgctatcgcacaatcata 11701999  T
Q  118 ctcgcttctttcatttatatcatggtcagt 147  Q
    || |||||| | || |||||| ||||||||    
T  11702000 cttgcttctcttatctatatcttggtcagt 11702029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 11696103 - 11696222
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||| |||||||||||||||||||||  ||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||| |||||||||||     
T  11696103 tgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcatg 11696202  T
Q  118 ctcgcttctttcatttatat 137  Q
    || |||||| |||| |||||    
T  11696203 cttgcttctctcatctatat 11696222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 11797944 - 11798069
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||||| ||||||||| |||||| ||||  ||||||||| ||||||||||||||||||||  |||||||||||||||||||| |||| ||||||||||||    
T  11797944 tgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttggtgctttcattgctgattcttttcttggacgctaccgcacaatcata 11798043  T
Q  118 ctcgcttctttcatttatatcatggt 143  Q
    || |||||| |||| ||||| |||||    
T  11798044 cttgcttctctcatctatattatggt 11798069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 11779082 - 11779190
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||| ||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||  |||||||||||||||||||| |||||| ||||||||||    
T  11779082 tgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttggtgcattcattgctgattcttttcttggacgctatcacacaatcata 11779181  T
Q  118 ctcgcttct 126  Q
    || ||||||    
T  11779182 cttgcttct 11779190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 11707451 - 11707575
Alignment:
Q  243 tttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcaca 342  Q
    |||||||||||||||||||| || |  |  | |||||||||||||||||||||||||||||| |||| ||||| |||||||  ||||||||| | |||||    
T  11707451 tttgatgttggtcattggctgaaaacaatttacagggactaggcttgttaacattatcagctttgctcccttcactcacattttgttctcctcaatcaca 11707550  T
Q  343 agtaatcttatttttcatctcactc 367  Q
    |||||||||||| ||||||||||||    
T  11707551 agtaatcttattcttcatctcactc 11707575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 11787793 - 11787885
Alignment:
Q  275 cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcactc 367  Q
    |||||||||||||||||||| || || |||||||| |||||  ||||||  ||||||||| |||||||||| |||||||| ||||||||||||    
T  11787793 cagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactc 11787885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 11799960 - 11800052
Alignment:
Q  275 cagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcactc 367  Q
    |||||||||||||||||||| || || |||||||| |||||  ||||||  ||||||||| |||||||||| |||||||| ||||||||||||    
T  11799960 cagggactaggcttgttaacgttgtcggctatgctgccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactc 11800052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 11783938 - 11784054
Alignment:
Q  249 gttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcacaagtaat 348  Q
    ||||||||||||||||||  ||  | ||||||||||||||||||||||| || |||||||| |||||  | |||   | ||||||| |||||||||||||    
T  11783938 gttggtcattggcttaat--gatttgcagggactaggcttgttaacattgtcggctatgctgccttccattacaatttattctcctcagtcacaagtaat 11784035  T
Q  349 cttatttttcatctcactc 367  Q
     ||||| ||| ||||||||    
T  11784036 gttattcttcttctcactc 11784054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 16545 - 16653
Alignment:
Q  18 tgctgagaatgtgaatatttgggctggagttgcttctctccttcctctctttggtgcttttgttgctgattcttttcttggatgctatcgcacaatcata 117  Q
    |||| |||||||||||||||||||||||  ||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||||||    
T  16545 tgctaagaatgtgaatatttgggctggaactgcttctctacttcctctcttaggtgctttcgttgctgattcttttcttggacgctatcacacaatcata 16644  T
Q  118 ctcgcttct 126  Q
    || ||||||    
T  16645 cttgcttct 16653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 19515 - 19639
Alignment:
Q  243 tttgatgttggtcattggcttaatatgaaattcagggactaggcttgttaacattatcagctatgcttccttctctcacatcctgttctcctgagtcaca 342  Q
    |||||||||||||||||||||||||| |  | ||||||||||||||||||||| ||||| |||| |||||||| ||| |||| |||||| || | |||||    
T  19515 tttgatgttggtcattggcttaatataatttacagggactaggcttgttaacactatcaactattcttccttcactcgcatcttgttctactcaatcaca 19614  T
Q  343 agtaatcttatttttcatctcactc 367  Q
    |||||||||||| ||||| ||||||    
T  19615 agtaatcttattcttcatttcactc 19639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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