View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_21 (Length: 300)
Name: NF1402_low_21
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_21 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 67 - 300
Target Start/End: Original strand, 19374113 - 19374349
Alignment:
| Q |
67 |
accgtaagagtcttgtaacctttgcactgaatcacttatcggagaaccc----atccccattgccggttattcataccaccaaatgaagttcaacgaacc |
162 |
Q |
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| T |
19374113 |
accgtaagagttttgtaacctttccactgaatcacttattggagaacccgttgatccccattgccggtaattcataccaccaaatgaagttcaacgaacc |
19374212 |
T |
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| Q |
163 |
tagccgaattattggttcatgcaatggactgctgtgtttgctcgatcatactaccatgttcgcccttccataatccctgttccgtatctggagcccgacc |
262 |
Q |
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| T |
19374213 |
tagccgaattattggttcatgcaatggactgctctgtttgctcgatcatactaccatgttcgccgttccaaaatccccgttccgtatctggaacccgacc |
19374312 |
T |
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| Q |
263 |
tcaagaataatatctgaaataattttgatcttttaacc |
300 |
Q |
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| T |
19374313 |
acaagaataatatctgaaa-aatttggatcttttaacc |
19374349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 79 - 300
Target Start/End: Complemental strand, 19345287 - 19345063
Alignment:
| Q |
79 |
ttgtaacctttgcactgaatcacttatcggagaaccc----atccccattgccggttattcataccaccaaatgaagttcaacgaacctagccgaattat |
174 |
Q |
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| T |
19345287 |
ttgtatcctttccactgaatcacttatttgagaacccgtcgatcaccgttaccagtaattcttatcaccaactgaagttcaaccaacctagcccaattat |
19345188 |
T |
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| Q |
175 |
tggttcatgcaatggactgctgtgtttgctcgatcatactaccatgttcgcccttccataatccctgttccgtatctggagcccgacctcaagaataata |
274 |
Q |
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| T |
19345187 |
tggttcatgcaatggactgctttgtttgctcgatcatacaaccatgtccagtgttccaaaatcctggttccgtatctggaacccgaccacaagaataata |
19345088 |
T |
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| Q |
275 |
tctgaaataattttgatcttttaacc |
300 |
Q |
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| T |
19345087 |
tctgtaa-aatttggatcttttaacc |
19345063 |
T |
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