View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1402_low_23 (Length: 296)
Name: NF1402_low_23
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 1776190 - 1776448
Alignment:
| Q |
11 |
agaatatgagaggtgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaatta |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1776190 |
agaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaatta |
1776289 |
T |
|
| Q |
111 |
tccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttcttt |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1776290 |
tccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttcttt |
1776389 |
T |
|
| Q |
211 |
caatatcagtttttcatcattaaagataggatgtggcctcaccaacgatgatccaagtg |
269 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1776390 |
caatatcagtttttcatcattaaagataggatgtggcctcaccaacgatgatccaagtg |
1776448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 1782616 - 1782874
Alignment:
| Q |
11 |
agaatatgagaggtgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaatta |
110 |
Q |
| |
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||||| ||||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
1782616 |
agaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaacatatggaccagttctctcaatta |
1782715 |
T |
|
| Q |
111 |
tccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttcttt |
210 |
Q |
| |
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|||||||||||| ||||||| | |||| | |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1782716 |
tccataattgcatatcctctttgatgatattgtctcctttgctgataatgaagacttttggtacccttccattcctctgcttggtaactcttgtttcttt |
1782815 |
T |
|
| Q |
211 |
caatatcagtttttcatcattaaagataggatgtggcctcaccaacgatgatccaagtg |
269 |
Q |
| |
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||| | |||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
1782816 |
caacactagttttatgtcgttaaagataggatgtggcctcaccaatgatgatccaagtg |
1782874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 1800396 - 1800654
Alignment:
| Q |
11 |
agaatatgagaggtgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaatta |
110 |
Q |
| |
|
||||| |||||||||||||||| ||||| || ||||| | |||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||| | |
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| T |
1800396 |
agaatgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaacatatggacgagtattctcaatca |
1800495 |
T |
|
| Q |
111 |
tccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttcttt |
210 |
Q |
| |
|
|||||| ||| | ||||||| | | ||| | ||| |||| ||| |||||| |||| || |||||||||||||| | |||||||||||||||||||| |
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| T |
1800496 |
tccatatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaaggctttaggcacccttccattcctatgtttggtaactcttgtttcttt |
1800595 |
T |
|
| Q |
211 |
caatatcagtttttcatcattaaagataggatgtggcctcaccaacgatgatccaagtg |
269 |
Q |
| |
|
||| | ||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1800596 |
caacaatagttttttgtcattaaagataggatgtggcctcaccaacgataatccaagtg |
1800654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 24 - 266
Target Start/End: Complemental strand, 21124822 - 21124579
Alignment:
| Q |
24 |
tgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaattatccataattgcag |
123 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| | |||||||||||||||||| ||||| |||| | || ||||| |||| | ||||||||||||||||| |
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| T |
21124822 |
tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggaccaattctgttaattatccataattgcat |
21124723 |
T |
|
| Q |
124 |
atcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttctttcaatatcagtttt |
223 |
Q |
| |
|
||| ||||||||||||||||||||||| | |||| |||||||||||||| ||| ||| |||| ||||||||||||||||||| ||||| | |||||| |
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| T |
21124722 |
atcttctctaatgaaaatgtctcctttgcaaataacaaagacttttggtacactttcatccctctgcttggtaactcttgtttcgttcaacaatagtttt |
21124623 |
T |
|
| Q |
224 |
-tcatcattaaagataggatgtggcctcaccaacgatgatccaa |
266 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
21124622 |
atattcattaaagataggatgtggcctcaccaaaaatgatccaa |
21124579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 1672802 - 1673038
Alignment:
| Q |
17 |
tgagaggtgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaattatccata |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||| |||| |||| | || || ||||||||| ||||||||||| |
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|
| T |
1672802 |
tgagaggtgagcttttttggtttggagaacatgaccatttgatccgaatccattatcacattcagctcaatacatggatcagttctcttaattatccata |
1672901 |
T |
|
| Q |
117 |
attgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttctttcaatat |
216 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| | |||| |||| |||||||||| ||||| | |||| ||||||||||||||||||| ||||| | |
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| T |
1672902 |
attgcatatcttctctaatgaaaatgtctcctttgcaaataacgaaggcttttggtacacttccgtccctctgcttggtaactcttgtttcgttcaacaa |
1673001 |
T |
|
| Q |
217 |
cagtttt-tcatcattaaagataggatgtggcctcac |
252 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||| |
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|
| T |
1673002 |
tagttttgtattcattaaagataggatgtggcctcac |
1673038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 4081500 - 4081434
Alignment:
| Q |
15 |
tatgagaggtgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcac |
81 |
Q |
| |
|
|||| |||||||||||||| |||| |||||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
4081500 |
tatgtgaggtgagcttttttagtttagagaacatggccatgtgatctgaatccattatcacattcac |
4081434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 71 - 234
Target Start/End: Original strand, 32315559 - 32315722
Alignment:
| Q |
71 |
atcactttcacttcaacatatagaccagttctctcaattatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttg |
170 |
Q |
| |
|
||||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
32315559 |
atcacattcacctcaacatatggaccagttctctcaattatccataattgcatatcctctctaatgaaaatgtctcctttgtagataatgaagacttcta |
32315658 |
T |
|
| Q |
171 |
gtacccttccattcctcagcttggtaactcttgtttctttcaatatcagtttttcatcattaaa |
234 |
Q |
| |
|
|| | ||||||| |||| ||||||||||||||||||| |||||| |||||||| |||||||| |
|
|
| T |
32315659 |
gtgctcttccatccctctgcttggtaactcttgtttcgttcaatgatagtttttcgtcattaaa |
32315722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 25730084 - 25729826
Alignment:
| Q |
11 |
agaatatgagaggtgagctttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaatta |
110 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||||||| | ||| ||||||||| | |||||||||||||| ||||||||| ||||||| || |||| | |
|
|
| T |
25730084 |
agaatgtgagaggtgagtttttttggtttggagaacatgaccatatgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatca |
25729985 |
T |
|
| Q |
111 |
tccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccattcctcagcttggtaactcttgtttcttt |
210 |
Q |
| |
|
||| | ||| ||||||| || ||||||||| |||| ||| ||| ||||||| || |||||||||| ||| |||||||||||||||||||||| |
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|
| T |
25729984 |
cccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgtagactttaggcacccttccatacctatgcttggtaactcttgtttcttt |
25729885 |
T |
|
| Q |
211 |
caatatcagtttttcatcattaaagataggatgtggcctcaccaacgatgatccaagtg |
269 |
Q |
| |
|
||||| |||||||| ||||||||| |||||||||||||||| |||||| ||||||||| |
|
|
| T |
25729884 |
caataatagtttttcgtcattaaagttaggatgtggcctcactaacgataatccaagtg |
25729826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 19790078 - 19790000
Alignment:
| Q |
29 |
tttttaggtttggagaacataatcatgtgatctgaatcctttatcactttcacttcaacatatagaccagttctctcaa |
107 |
Q |
| |
|
||||| |||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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|
| T |
19790078 |
ttttttggtttggagaacatgaccatttgatctgaatcctttatcacattcacctcaacatatggaccagttctctcaa |
19790000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 41324592 - 41324632
Alignment:
| Q |
41 |
gagaacataatcatgtgatctgaatcctttatcactttcac |
81 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
41324592 |
gagaacatgaccatgtgatctgaatcctttatcacattcac |
41324632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 47249730 - 47249690
Alignment:
| Q |
41 |
gagaacataatcatgtgatctgaatcctttatcactttcac |
81 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
47249730 |
gagaacatgaccatgtgatctgaatcctttatcacattcac |
47249690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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