View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1402_low_24 (Length: 289)
Name: NF1402_low_24
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 9305527 - 9305785
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttcnn |
106 |
Q |
| |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9305527 |
tattcttgtggagttaggatgagattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgtactt |
9305626 |
T |
|
| Q |
107 |
nnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactctatttatataagatgtattcatcatattgattggtggat |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9305627 |
tttttcttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactctatttatataagatgtattcatcatattgattggtggat |
9305726 |
T |
|
| Q |
207 |
aattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatg |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9305727 |
aattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatg |
9305785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 7 - 265
Target Start/End: Original strand, 9352056 - 9352312
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttcnn |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||| ||||||||||||||| |||| |
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| T |
9352056 |
tattcttgtggagttgggatgtgattgagaaggaaaactgtttgagcgaacatgatacttggtgtttgccatatttgtctttaatttgttgtgtgttatt |
9352155 |
T |
|
| Q |
107 |
nnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttga--ctctatttatataagatgtattcatcatattgattggtgg |
204 |
Q |
| |
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||||||||| ||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||| | |
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|
| T |
9352156 |
tttcttttctaagat---tgtaaagctcaatgtttgtgtgatgttaccaagttcttgaatctctatttatataagaggtattcgtcatattgattggttg |
9352252 |
T |
|
| Q |
205 |
ataattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatg |
265 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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|
| T |
9352253 |
ataattattaaattcatatgataatga-aattaataaaataaacagcacttgttagtgatg |
9352312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 23 - 257
Target Start/End: Complemental strand, 9367548 - 9367313
Alignment:
| Q |
23 |
ggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttcnnnnnnncttctaagata |
122 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||| |
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|
| T |
9367548 |
ggatgagattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaaattatagtttgttctttttttcttctaagata |
9367449 |
T |
|
| Q |
123 |
attgtaaagctaaatgtttgtgttatgttaccaaggtcttga--ctctatttatataagatgtattcatcatattgattggtggataattattaaattca |
220 |
Q |
| |
|
||| ||||||| | |||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| || |||||||||||||| |
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|
| T |
9367448 |
attataaagctctaagtttgtgtgatgttaccaagttcttgactctctatttatataagaggtattcatcatattgattggttgagaattattaaattca |
9367349 |
T |
|
| Q |
221 |
tatgataatgatttttaataaaatatacagcacttgt |
257 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| |
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|
| T |
9367348 |
tatgataatga-aattaataaaatatgaagcacttgt |
9367313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 9332328 - 9332546
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttcnn |
106 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| || ||||||||||| ||||||||||| ||| |||| |
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|
| T |
9332328 |
tattcttgtggagttgggatgtgattgagaaggaaaactgtttgagcgaacatgatacttggtgtttgccatatttttctttaatttgctgtgtgttatt |
9332427 |
T |
|
| Q |
107 |
nnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttga--ctctatttatataagatgtattcatcatattgattggtgg |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||| | |
|
|
| T |
9332428 |
tttcttttctaagataattgtaaagctcaatgtttgtgtgatgttaccaagttcttgatgctctatttatataagaggtattcgtcatattgattggttg |
9332527 |
T |
|
| Q |
205 |
ataattattaaattcatat |
223 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
9332528 |
ataattatttaattcatat |
9332546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 265
Target Start/End: Original strand, 9301910 - 9302167
Alignment:
| Q |
8 |
attcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatattt----ctcttt-aatttgttgtttgt |
102 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||| ||| | |
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|
| T |
9301910 |
attctagtggagtttggatgagattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatcttaactgctcttttaatttgttcttttt |
9302009 |
T |
|
| Q |
103 |
tcnnnnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactc--tatttatataagatgtattcatcatattgattg |
200 |
Q |
| |
|
| ||||||||||| ||| ||||||| | |||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
9302010 |
t------ttcttctaagatagttgaaaagctagaagtttgtgtgatgttaccaagttcttgactccctatttatataagaggtattcatcatattgattg |
9302103 |
T |
|
| Q |
201 |
gtggataattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatg |
265 |
Q |
| |
|
|| ||||||| ||||||| |||| ||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
9302104 |
gttgataattgttaaattgatataataatga-aattaataaaatatgcagcacttgttagtgatg |
9302167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 9293087 - 9293247
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttcnn |
106 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9293087 |
tattcttgtggagttaggatgagattgagaaggaaaactgtttgagcgaacgtggtaattgttgcttgccatatttctctttaatttgttgtttgtt-at |
9293185 |
T |
|
| Q |
107 |
nnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactct |
168 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
9293186 |
tttttcttctaagataattgtaaagcttaatgtttgtgtgatgttaccaagttcttgactct |
9293247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 9297694 - 9297867
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgt--tc |
104 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||| | |
|
|
| T |
9297694 |
tattcttgtggagttaggatgagattgagaaggaaaactgtttgagcgaacatggtacttgttgcttgccatatttctctttaaattgtagtttgttatt |
9297793 |
T |
|
| Q |
105 |
nnnnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactctatttatataa |
178 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |||| ||||||||| ||||||||| |
|
|
| T |
9297794 |
tttttttcttctaagataattgtaaagctcaatgtttgtgtgatgttaacaagtgcttgactctctttatataa |
9297867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 9288558 - 9288655
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttc |
104 |
Q |
| |
|
|||||||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9288558 |
tattcttgaggtgttaggatgagattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgttc |
9288655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 9373470 - 9373374
Alignment:
| Q |
7 |
tattcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccatatttctctttaatttgttgtttgtt |
103 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
9373470 |
tattcttgtggagttaggatgagattgagaaggaaaactgtttgagcgaacatggtacttgttgcttgccatatttctctttaatctgttgtttgtt |
9373374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 9309939 - 9309765
Alignment:
| Q |
8 |
attcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccat----atttctctttaatttgttgtttg-t |
102 |
Q |
| |
|
||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| | |
|
|
| T |
9309939 |
attctagtggagcttggatgagattgagaaggaaaactgtttgagcgaacatggta---tttgcttgacatcttaatttctccttaatttgttgtttgtt |
9309843 |
T |
|
| Q |
103 |
tcnnnnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaaggtcttgactctatttatataaga |
180 |
Q |
| |
|
|| |||||||| |||||||||||| ||||||||||| |||| ||||| || ||||||| ||||||||||| |
|
|
| T |
9309842 |
tcttttttagttctaagaaaattgtaaagctcaatgtttgtgtggtgttcccaagttcctgactctctttatataaga |
9309765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 157
Target Start/End: Complemental strand, 9356347 - 9356196
Alignment:
| Q |
8 |
attcttgtggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggtaattgttgcttgccat----atttctctttaatttgttgtttg-t |
102 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||| | |
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|
| T |
9356347 |
attcttgtggagcttggatgggattgagaaggaaagctatttgagcgaacatggta---tttgcttgccatcttaattgctctttaatttgttgtttgtt |
9356251 |
T |
|
| Q |
103 |
tcnnnnnnncttctaagataattgtaaagctaaatgtttgtgttatgttaccaag |
157 |
Q |
| |
|
|| |||||||| ||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
9356250 |
tcttttttagttctaagaaaatggtaaagctcaatgtttgtgtggtgttaccaag |
9356196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 9348957 - 9348910
Alignment:
| Q |
16 |
ggagtttggatgtgattgagaaggaaaactgtttgagcgaacatggta |
63 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9348957 |
ggagcttggatgagattgagaaggaaaactatttgagcgaacatggta |
9348910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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