View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_27 (Length: 276)
Name: NF1402_low_27
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 45367458 - 45367212
Alignment:
| Q |
25 |
tttattttgtca--ctaaattggattgcgagaaaattgtagaaccaaattgggtcttcactctgaatattagtccactgataagctgaggcacaacactt |
122 |
Q |
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| T |
45367458 |
tttattttgtcagactaaattggattgcgagaaaattgtagaaccaaattgggtcttcactctgaatattagtccactgataagctgaggcacaacactt |
45367359 |
T |
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| Q |
123 |
ggacatgctaaattcctaggttgctttctctccctattttgtttaacacttcttgcttggtttctttacagattcattcaaaccaaaacctatgaagctc |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45367358 |
ggacatgctaaattcctaggttgctttctctccctattttgtttaacacttcttgcttggtttctttacagattcattcaaaccaaaacctatgaagctc |
45367259 |
T |
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| Q |
223 |
atcaacataaatgggttcgctctagaattgcttcgaaagtataattt |
269 |
Q |
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| T |
45367258 |
atcaacataaatgggttcactctagaattgcttcgaaagtataattt |
45367212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 36 - 238
Target Start/End: Complemental strand, 432336 - 432137
Alignment:
| Q |
36 |
actaaattggattgcgagaaaattgtagaaccaaattgggtcttcactctgaatattagtccactgataagctgaggcacaacacttggacatgctaaat |
135 |
Q |
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| T |
432336 |
actaaattgggttgcgagaaaattgtaagaccaaattgg-tcttcactccgaatattagtacactgataagctgaggca--acactaggacatgccaaat |
432240 |
T |
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| Q |
136 |
tcctaggttgctttctctccctattttgtttaacacttcttgcttggtttctttacagattcattcaaaccaaaacctatgaagctcatcaacataaatg |
235 |
Q |
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| T |
432239 |
tcctaggttgctttctctccctattttgtttagcacttcttgcttggtttctttacagattcattcaaaccaaaagctatgaagctcatcaacataaatg |
432140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 171
Target Start/End: Original strand, 41816081 - 41816113
Alignment:
| Q |
139 |
taggttgctttctctccctattttgtttaacac |
171 |
Q |
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| T |
41816081 |
taggttgctttctctccctattttgtttaacac |
41816113 |
T |
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