View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_low_31 (Length: 266)

Name: NF1402_low_31
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_low_31
NF1402_low_31
[»] chr3 (9 HSPs)
chr3 (1-233)||(52893351-52893583)
chr3 (29-233)||(2338811-2339013)
chr3 (6-182)||(21239406-21239582)
chr3 (34-163)||(9456400-9456533)
chr3 (38-133)||(40922976-40923071)
chr3 (38-133)||(2733793-2733888)
chr3 (1-43)||(2338761-2338803)
chr3 (181-238)||(9456318-9456375)
chr3 (97-156)||(4329855-4329916)
[»] chr4 (14 HSPs)
chr4 (1-233)||(45143892-45144124)
chr4 (1-233)||(45152661-45152893)
chr4 (28-266)||(13740246-13740483)
chr4 (29-233)||(23218215-23218419)
chr4 (28-266)||(21355745-21355992)
chr4 (34-238)||(47825813-47826027)
chr4 (32-238)||(54785186-54785403)
chr4 (34-238)||(21604330-21604545)
chr4 (34-238)||(46164366-46164581)
chr4 (34-238)||(8432980-8433195)
chr4 (29-216)||(33753956-33754142)
chr4 (36-148)||(38115443-38115562)
chr4 (36-133)||(14799999-14800096)
chr4 (29-94)||(3187581-3187646)
[»] chr8 (19 HSPs)
chr8 (29-233)||(1668025-1668229)
chr8 (29-233)||(16658740-16658944)
chr8 (29-233)||(38521221-38521422)
chr8 (41-233)||(6786357-6786550)
chr8 (34-238)||(22432291-22432506)
chr8 (34-163)||(29182575-29182708)
chr8 (34-238)||(27576667-27576888)
chr8 (34-238)||(774680-774896)
chr8 (28-128)||(22014860-22014960)
chr8 (29-163)||(43916091-43916225)
chr8 (36-148)||(11472357-11472476)
chr8 (36-133)||(42808687-42808784)
chr8 (41-133)||(33360397-33360489)
chr8 (34-89)||(780362-780417)
chr8 (184-238)||(22014748-22014802)
chr8 (181-238)||(780493-780550)
chr8 (97-156)||(34212961-34213020)
chr8 (181-238)||(18068479-18068536)
chr8 (181-222)||(29182733-29182774)
[»] chr2 (8 HSPs)
chr2 (29-233)||(3935367-3935571)
chr2 (43-231)||(38978382-38978570)
chr2 (34-163)||(25697567-25697700)
chr2 (28-93)||(32339602-32339669)
chr2 (181-222)||(25697725-25697766)
chr2 (109-150)||(8485531-8485572)
chr2 (104-156)||(20917027-20917079)
chr2 (187-220)||(8485607-8485640)
[»] scaffold1160 (1 HSPs)
scaffold1160 (29-238)||(2382-2585)
[»] scaffold0393 (1 HSPs)
scaffold0393 (28-233)||(11163-11365)
[»] chr5 (10 HSPs)
chr5 (28-238)||(3174068-3174289)
chr5 (34-238)||(32863552-32863763)
chr5 (34-238)||(10572607-10572822)
chr5 (29-163)||(19209107-19209241)
chr5 (29-163)||(23737872-23738006)
chr5 (28-139)||(43300188-43300299)
chr5 (28-154)||(41958593-41958717)
chr5 (109-233)||(18739449-18739579)
chr5 (13-84)||(18739382-18739453)
chr5 (38-133)||(22273148-22273243)
[»] chr7 (8 HSPs)
chr7 (34-238)||(6472244-6472459)
chr7 (34-238)||(9371711-9371926)
chr7 (34-163)||(21358022-21358155)
chr7 (38-163)||(35012978-35013107)
chr7 (28-154)||(44660309-44660434)
chr7 (46-133)||(31419280-31419367)
chr7 (181-238)||(35013133-35013190)
chr7 (97-156)||(12003038-12003099)
[»] chr1 (14 HSPs)
chr1 (34-238)||(29599251-29599466)
chr1 (34-238)||(324583-324798)
chr1 (28-156)||(17480981-17481109)
chr1 (34-233)||(26354914-26355125)
chr1 (34-163)||(48184225-48184352)
chr1 (34-116)||(26014504-26014586)
chr1 (29-128)||(16764520-16764621)
chr1 (28-126)||(10801550-10801650)
chr1 (44-128)||(6165049-6165133)
chr1 (184-238)||(6165191-6165245)
chr1 (186-238)||(16764681-16764733)
chr1 (184-238)||(10801711-10801765)
chr1 (181-222)||(26014446-26014487)
chr1 (181-238)||(48184143-48184200)
[»] chr6 (8 HSPs)
chr6 (34-163)||(32397218-32397352)
chr6 (62-163)||(9302995-9303095)
chr6 (38-133)||(7171047-7171142)
chr6 (97-156)||(14654645-14654704)
chr6 (181-238)||(32397136-32397193)
chr6 (97-156)||(32397747-32397808)
chr6 (184-216)||(9302935-9302967)
chr6 (190-238)||(16497344-16497392)
[»] scaffold1084 (1 HSPs)
scaffold1084 (36-148)||(1208-1324)
[»] scaffold0285 (2 HSPs)
scaffold0285 (29-128)||(8366-8467)
scaffold0285 (187-238)||(8528-8579)
[»] scaffold0054 (2 HSPs)
scaffold0054 (29-128)||(2888-2989)
scaffold0054 (184-238)||(2776-2830)
[»] scaffold1300 (1 HSPs)
scaffold1300 (36-170)||(924-1067)
[»] scaffold0005 (1 HSPs)
scaffold0005 (36-133)||(39631-39728)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 52893583 - 52893351
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893583 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 52893484  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52893483 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 52893384  T
Q  201 aggaggagagtggtcgcggctcaccggcggtgg 233  Q
    |||||||||||| ||||||||||||||||||||    
T  52893383 aggaggagagtgatcgcggctcaccggcggtgg 52893351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 2338811 - 2339013
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    |||||| |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2338811 aatcaaataaagaacatgtaata--caaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2338908  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2338909 ggagagagatggagataactctctaaactgaagaaggaggagagtaatcgcggcggcagtgatggatggagaaggaggagagtggtcgcggctcaccggc 2339008  T
Q  229 ggtgg 233  Q
    |||||    
T  2339009 ggtgg 2339013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 6 - 182
Target Start/End: Complemental strand, 21239582 - 21239406
Alignment:
Q  6 caggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttac 105  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21239582 caggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaatttcacattaccttac 21239483  T
Q  106 aagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggc 182  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||    
T  21239482 aagttacaacaattagggtttgtggagagagacggagatagctttctaaactgaagaagaaggagagtgatcgcggc 21239406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 9456533 - 9456400
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9456533 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattacctttcaagttacaacaattagggtttgtggaga 9456434  T
Q  134 gaga----tggagatagctctctaaactgaagaa 163  Q
    ||||    ||||||||||| |||||||| |||||    
T  9456433 gagatggatggagatagctgtctaaactaaagaa 9456400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 40923071 - 40922976
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| |||||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  40923071 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 40922976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 2733888 - 2733793
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  2733888 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 2733793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2338761 - 2338803
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaac 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  2338761 gtcaacaggtttaacaattagagttgaaaatcaactaaagaac 2338803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 9456375 - 9456318
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    ||||||||||||||||||||||||| ||||||||||| |||| ||||| |||| ||||    
T  9456375 gcggcggtgatggatggagaaggagaagagtggtcgcagctcgccggcagtggtgtgg 9456318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 4329855 - 4329916
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtg--gagagagatggagatagctctctaaac 156  Q
    ||||||||||| |||| | || |||||||||||  ||||||||||||||||||||| |||||    
T  4329855 ttaccttacaatttactagaactagggtttgtggagagagagatggagatagctctttaaac 4329916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45144124 - 45143892
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45144124 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 45144025  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  45144024 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaaggaggaggagagtaatcgcggaggcggtgatggatggaga 45143925  T
Q  201 aggaggagagtggtcgcggctcaccggcggtgg 233  Q
    |||||||||||| ||||||||||||||||||||    
T  45143924 aggaggagagtgatcgcggctcaccggcggtgg 45143892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45152893 - 45152661
Alignment:
Q  1 gtcaacaggtttaacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 100  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45152893 gtcaacaggtttaacaattagagttgacaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattac 45152794  T
Q  101 cttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  45152793 cttacaagttacaacaattagggtttgtggagagagatggagatagctttctaaactgaaggaggaggagagtaatcgcggaggcggtgatggatggaga 45152694  T
Q  201 aggaggagagtggtcgcggctcaccggcggtgg 233  Q
    |||||||||||| ||||||||||||||||||||    
T  45152693 aggaggagagtgatcgcggctcaccggcggtgg 45152661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 13740246 - 13740483
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13740246 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 13740345  T
Q  128 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccgg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  13740346 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcacttg 13740445  T
Q  228 cggtggggtgggggaagaaaaagattgcgtttctcactt 266  Q
    |  | || |||| |||||||| ||| |||||||||||||    
T  13740446 c-tttggttgggagaagaaaaggatcgcgtttctcactt 13740483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 23218215 - 23218419
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23218215 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 23218314  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23218315 ggagagagatggagataactctctaaactgaagaaggaggagagtaatcgcggcggcagtgatggatggagaaggaggagagtggtcgcggctcaccggc 23218414  T
Q  229 ggtgg 233  Q
    |||||    
T  23218415 ggtgg 23218419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 28 - 266
Target Start/End: Complemental strand, 21355992 - 21355745
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  21355992 aaatcaactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacgttaccttacaagttacaacaattagggtttg 21355893  T
Q  128 tggagagagatggagatagctctctaaactgaagaaggaggagag---------taatcgcggcggcggtgatggatggagaaggaggagagtggtcgcg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  21355892 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatgaaagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcg 21355793  T
Q  219 gctcaccggcggtggggtgggggaagaaaaagattgcgtttctcactt 266  Q
    ||||||| ||||||| ||||| |||||||| ||| |||||||||||||    
T  21355792 gctcacccgcggtggtgtgggagaagaaaaggatcgcgtttctcactt 21355745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 47826027 - 47825813
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47826027 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 47825928  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg-----gcggcggtgatggatggagaaggaggagagtggtcgcggctca 223  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |     ||||||||||||||||||||||||| ||||||||||||||||     
T  47825927 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgagggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcg 47825828  T
Q  224 ccggcggtggggtgg 238  Q
    ||||| |||| ||||    
T  47825827 ccggcagtggtgtgg 47825813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 54785186 - 54785403
Alignment:
Q  32 caactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 131  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54785186 caacttaagaacatgtaatcatcaaatcagaatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 54785285  T
Q  132 gaga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggc 220  Q
    ||||    |||||||| ||||| ||||||| |||||  |  | || | |||| |      |||||||||||||||||||||||||||||||||| |||||    
T  54785286 gagagatggatggagacagctccctaaactaaagaatcaatacagaagatcgaggaggatgcggcggtgatggatggagaaggaggagagtggttgcggc 54785385  T
Q  221 tcaccggcggtggggtgg 238  Q
    || |||||||||| ||||    
T  54785386 tcgccggcggtggtgtgg 54785403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 21604545 - 21604330
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604545 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21604446  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  21604445 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 21604346  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  21604345 gccggcagtggtgtgg 21604330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 46164366 - 46164581
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164366 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 46164465  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  46164466 gagatggatggagatagctctctaaactaaagaatcaatatagaagatagaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 46164565  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  46164566 gccggcagtggtgtgg 46164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 8432980 - 8433195
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8432980 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaataacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 8433079  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    ||||||||||||| |||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  8433080 gagatggatggagatagctttctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 8433179  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  8433180 gccggcagtggtgtgg 8433195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 33753956 - 33754142
Alignment:
Q  29 aatcaactaaagaac--atgtaatcatcaaatcataatcataattgaaggaaattacattcaat--ttcacatt-accttacaagttacaacaattaggg 123  Q
    |||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||||  ||||  || || ||||   |||||||||||||||    
T  33753956 aatcaactaaagaactcatgtaatcatcaaatcaaaatcataattgaagaaaattacattcaatatttcaatttcacattac---ttacaacaattaggg 33754052  T
Q  124 tttgtggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcg 216  Q
    |||||||| ||||||||||||| ||||| |||||||||||||| |||||||||     || |||||||||||||||||| ||| |||||||||    
T  33754053 tttgtggaaagagatggagataactctcaaaactgaagaaggatgagagtaat---tacgtcggtgatggatggagaagtaggtgagtggtcg 33754142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 38115562 - 38115443
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataatt----gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgt 128  Q
    |||| ||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||    
T  38115562 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgt 38115463  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  38115462 ggagagagatgaagatagct 38115443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 14799999 - 14800096
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||| |||||||||| |  ||||||||| |||||||||| |||||| ||||||| ||||||||  || |||||| ||||||||||||||||||    
T  14799999 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 14800096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 94
Target Start/End: Original strand, 3187581 - 3187646
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttca 94  Q
    |||||| ||||||||||||||||||||||  | ||||| | || ||||||| ||||||||||||||    
T  3187581 aatcaattaaagaacatgtaatcatcaaagaagaatcagatttaaaggaaaatacattcaatttca 3187646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 1668229 - 1668025
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668229 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 1668130  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1668129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 1668030  T
Q  229 ggtgg 233  Q
    |||||    
T  1668029 ggtgg 1668025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 16658944 - 16658740
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658944 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 16658845  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16658844 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 16658745  T
Q  229 ggtgg 233  Q
    |||||    
T  16658744 ggtgg 16658740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 38521221 - 38521422
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38521221 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 38521320  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||| |||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  38521321 ggagagagatggagataactctctaaact---gaaggaggagagtaatcgcggcggcagtgatggatggagaaggagaagagtggtcgcggctcaccggc 38521417  T
Q  229 ggtgg 233  Q
    |||||    
T  38521418 ggtgg 38521422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 41 - 233
Target Start/End: Complemental strand, 6786550 - 6786357
Alignment:
Q  41 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggagagagatg 139  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6786550 aacatgtaatcatcaaatcaaaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacagcaattagggtttgtggagagagatg 6786451  T
Q  140 gagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtgg 233  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  6786450 gagatagctttcaaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggttcgacggcggtgg 6786357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 22432291 - 22432506
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432291 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 22432390  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  22432391 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 22432490  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  22432491 gccggcagtggtgtgg 22432506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 29182575 - 29182708
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182575 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29182674  T
Q  134 ga----gatggagatagctctctaaactgaagaa 163  Q
    ||    |||||||||||||||||||||| |||||    
T  29182675 gagatggatggagatagctctctaaactaaagaa 29182708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 27576888 - 27576667
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||| ||||| |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27576888 actaaagaacatgtaatcatcaaatcagaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 27576789  T
Q  128 tggagagaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcg 216  Q
    ||||||||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||    
T  27576788 tggagagagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcg 27576689  T
Q  217 cggctcaccggcggtggggtgg 238  Q
    |||||| ||||| |||| ||||    
T  27576688 cggctcgccggcagtggtgtgg 27576667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 774680 - 774896
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||| |||| |||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  774680 actaaagaacatgtaattatcatatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 774779  T
Q  133 a--ga--gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggct 221  Q
    |  ||  |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||||||||||||||||| |    
T  774780 aaggatggatggagatagctctctaaactaaagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggtt 774879  T
Q  222 caccggcggtggggtgg 238  Q
    | |||||||||| ||||    
T  774880 cgccggcggtggtgtgg 774896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 22014960 - 22014860
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22014960 aaatcaactaaagaatatgtaatcatcaaacaataatcataattgaaggaaattacattcaatttcacattaacttacaagttacaacaattagggtttg 22014861  T
Q  128 t 128  Q
    |    
T  22014860 t 22014860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 43916225 - 43916091
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||| |||||| |||| | |||  | ||||| | ||||||||||||||||| || |||||||| |||||||| |||||||||| ||||||| |    
T  43916225 aatcaactaaataacatgcaatcgttaaagaagaatcagatttgaaggaaattacattaaaattcacatttccttacaatttacaacaatcagggtttat 43916126  T
Q  129 ggagagagatggagatagctctctaaactgaagaa 163  Q
    |||||||||||||||||||||||||||||||||||    
T  43916125 ggagagagatggagatagctctctaaactgaagaa 43916091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 11472357 - 11472476
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataat----tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtt---tgt 128  Q
    |||||||||||||||||||| |||| |||||||||    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||   |||    
T  11472357 taaagaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagggttttctgt 11472456  T
Q  129 ggagagagatggagatagct 148  Q
    ||||||||||| ||||||||    
T  11472457 ggagagagatgaagatagct 11472476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 42808784 - 42808687
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||||| |  ||||||||| |||||||||| |||||||||||||| |||||||| ||| |||||| ||||||||||||||||||    
T  42808784 taaagaacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaccttgcaatttacaagaattagggtttgtggaga 42808687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 133
Target Start/End: Complemental strand, 33360489 - 33360397
Alignment:
Q  41 aacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||| |  ||||||||| |||||||||| |||||||||||||| |||| ||| ||| |||| | ||||||||||||||||||    
T  33360489 aacatgtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcatattaacttgcaatttaccagaattagggtttgtggaga 33360397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 780362 - 780417
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 89  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  780362 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 780417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 22014802 - 22014748
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  22014802 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 22014748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 780493 - 780550
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  780493 gcggcggtgatggatggagaaggaggagagtggtcgcggttcgccggcggtggtgtgg 780550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 34212961 - 34213020
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  34212961 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagctctttaaac 34213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 18068536 - 18068479
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  18068536 gcggcggtgatggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtgg 18068479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 29182733 - 29182774
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  29182733 gcggcggtgatggatggagaaggagaagagtggtcgcggctc 29182774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 3935367 - 3935571
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935367 aatcaactaaagaacatgtaatcatcaaattataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 3935466  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3935467 ggagagagatggagatagctctctaaactgaagaagtaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 3935566  T
Q  229 ggtgg 233  Q
    |||||    
T  3935567 ggtgg 3935571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 43 - 231
Target Start/End: Original strand, 38978382 - 38978570
Alignment:
Q  43 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggag 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38978382 catgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacactaccttacaagttacaacaattagggtttgtggagagagatggag 38978481  T
Q  143 atagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggt 231  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38978482 atagctttctaaactgaagaaggaggagagtaattgcggcggcggtgatggatggagaaggaggagagtgatcgcggctcaccggcggt 38978570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 25697567 - 25697700
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25697567 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagtaacaacaattagggtttgtggaga 25697666  T
Q  134 ga----gatggagatagctctctaaactgaagaa 163  Q
    ||    |||||||||||||||||||||| |||||    
T  25697667 gagatggatggagatagctctctaaactaaagaa 25697700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 32339669 - 32339602
Alignment:
Q  28 aaatcaactaaagaac--atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttc 93  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  32339669 aaatcaactaaagaactcatgtaatcatcaaatcagaatcataattgaagaaaattacattcaatttc 32339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 25697725 - 25697766
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  25697725 gcggcggtgatggatggagaaggagaagagtggtcgcggctc 25697766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 8485531 - 8485572
Alignment:
Q  109 ttacaacaattagggtttgtggagagagatggagatagctct 150  Q
    |||||| ||||||||||||||||||||||| |||||||||||    
T  8485531 ttacaagaattagggtttgtggagagagatagagatagctct 8485572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 20917079 - 20917027
Alignment:
Q  104 acaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 156  Q
    |||| |||||| || || ||||||||||||||||||||||||||||| |||||    
T  20917079 acaatttacaagaactaaggtttgtggagagagatggagatagctctttaaac 20917027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 220
Target Start/End: Original strand, 8485607 - 8485640
Alignment:
Q  187 gtgatggatggagaaggaggagagtggtcgcggc 220  Q
    |||||||||||||||||||| |||||||||||||    
T  8485607 gtgatggatggagaaggaggtgagtggtcgcggc 8485640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1160 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 2585 - 2382
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2585 aatcaactaaagaacatgtaatcatcaaatcataat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 2492  T
Q  129 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2491 ggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggc 2392  T
Q  229 ggtggggtgg 238  Q
    ||||| ||||    
T  2391 ggtggtgtgg 2382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 11163 - 11365
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11163 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattaggatttg 11262  T
Q  128 tggagagagatggagatagctctctaaactgaagaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggagagtggtcgcggctcaccgg 227  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  11263 tggagagagatggagatagctctctaaact---gaaggaggagagtaatcgcggcggcggtgatggatggagaaggaggaaagtggtcgcggctcaccgt 11359  T
Q  228 cggtgg 233  Q
    ||||||    
T  11360 cggtgg 11365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 3174289 - 3174068
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3174289 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 3174190  T
Q  128 tggagagaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcg 216  Q
    ||||||||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||    
T  3174189 tggagagagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcg 3174090  T
Q  217 cggctcaccggcggtggggtgg 238  Q
    |||||| ||||| |||| ||||    
T  3174089 cggctcgccggcagtggtgtgg 3174068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 32863763 - 32863552
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863763 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 32863664  T
Q  134 gagatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccg 226  Q
      |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| |||||||||||||||| |||    
T  32863663 tggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctcgccg 32863564  T
Q  227 gcggtggggtgg 238  Q
    || |||| ||||    
T  32863563 gcagtggtgtgg 32863552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 10572822 - 10572607
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572822 actaaagaacatgtaatcatcaaatcagaatcacaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 10572723  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  10572722 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 10572623  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  10572622 gccggcagtggtgtgg 10572607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 19209107 - 19209241
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||| ||| || ||||| | |||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |    
T  19209107 aatcaactaaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaatttcacgttaccttacgatttacaacaattagggtttat 19209206  T
Q  129 ggagagagatggagatagctctctaaactgaagaa 163  Q
    ||||||||||| |||||||||| ||||||||||||    
T  19209207 ggagagagatgcagatagctctttaaactgaagaa 19209241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 23738006 - 23737872
Alignment:
Q  29 aatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||||||||||| |||  | ||||| | |||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| |    
T  23738006 aatcaactaaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaatttcatgttaccttacaatttacaacaattagggtttat 23737907  T
Q  129 ggagagagatggagatagctctctaaactgaagaa 163  Q
    ||||||||||| |||||||||| ||||||||||||    
T  23737906 ggagagagatgcagatagctctttaaactgaagaa 23737872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 28 - 139
Target Start/End: Complemental strand, 43300299 - 43300188
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||| ||||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||     
T  43300299 aaatcaacaaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttacaacaattagggttta 43300200  T
Q  128 tggagagagatg 139  Q
    ||||||||||||    
T  43300199 tggagagagatg 43300188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 41958593 - 41958717
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||||||| ||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||  || | ||||||||||||||||     
T  41958593 aaatcaactaaa-aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttgtaattaacaacaattagggttta 41958691  T
Q  128 tggagagagatggagatagctctctaa 154  Q
    ||||||||||| |||||| ||||||||    
T  41958692 tggagagagat-gagataactctctaa 41958717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 18739449 - 18739579
Alignment:
Q  109 ttacaacaattagggtttgtggagagagatggag----atagctctctaaact---gaagaaggaggagagtaatcgcggcggcggtgatggatggagaa 201  Q
    |||||| |||||||||||||||||||||||| ||    | ||||||||||| |   ||||||| ||||||||||||   |||||||||||||||||||||    
T  18739449 ttacaataattagggtttgtggagagagatgaaggaagaaagctctctaaattgaagaagaagaaggagagtaatc---gcggcggtgatggatggagaa 18739545  T
Q  202 ggaggagagtgg--tcgcggctcaccggcggtgg 233  Q
     |||||||||||  ||||||||||||||||||||    
T  18739546 agaggagagtggtctcgcggctcaccggcggtgg 18739579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 18739382 - 18739453
Alignment:
Q  13 aacaattagagttcaaaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattaca 84  Q
    ||||||||| |||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  18739382 aacaattagggttggaaatcaactaaataacatgtaatcatcaaatcagaatcataattgaaggaaattaca 18739453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 22273148 - 22273243
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  22273148 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 22273243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 6472244 - 6472459
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472244 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 6472343  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  6472344 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 6472443  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  6472444 gccggcagtggtgtgg 6472459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 9371926 - 9371711
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371926 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 9371827  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  9371826 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 9371727  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  9371726 gccggcagtggtgtgg 9371711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 34 - 163
Target Start/End: Original strand, 21358022 - 21358155
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358022 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 21358121  T
Q  134 ga----gatggagatagctctctaaactgaagaa 163  Q
    ||    |||||||||||||||||||||| |||||    
T  21358122 gagatggatggagatagctctctaaactaaagaa 21358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 163
Target Start/End: Original strand, 35012978 - 35013107
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagaga-- 135  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  35012978 aagaacatgtaattatcaaatcagaatcaggattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagaga 35013077  T
Q  136 --gatggagatagctctctaaactgaagaa 163  Q
      |||||||||||||||||||||| |||||    
T  35013078 tggatggagatagctctctaaactaaagaa 35013107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 44660434 - 44660309
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||||||||||||||||||||| |||  | ||||| ||||||| ||||||||||||||||||||||||||||| || ||| ||||||||||||||     
T  44660434 aaatcaactaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaatttcacattaccttataatttagaacaattagggttta 44660335  T
Q  128 tggagagagatggagatagctctctaa 154  Q
    ||||||||||| |||||| ||||||||    
T  44660334 tggagagagat-gagataactctctaa 44660309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 133
Target Start/End: Complemental strand, 31419367 - 31419280
Alignment:
Q  46 gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||| |  ||||||||| |||||||||| |||||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  31419367 gtaatcatcagagaataatcatatttgaaggaaaatacattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 31419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 35013133 - 35013190
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    ||||||||||||||||||||||||| |||||||||||||| | ||||| |||| ||||    
T  35013133 gcggcggtgatggatggagaaggagaagagtggtcgcggcccgccggcagtggtgtgg 35013190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 12003038 - 12003099
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtgg--agagagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| ||||||||| |||||  |||||||||||||||||||| |||||    
T  12003038 ttaccttacaatttacaagaattagggtgtgtggaaagagagatggagatagctctttaaac 12003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 29599251 - 29599466
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599251 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 29599350  T
Q  134 ga----gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||    |||||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  29599351 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 29599450  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  29599451 gccggcagtggtgtgg 29599466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 34 - 238
Target Start/End: Complemental strand, 324798 - 324583
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  324798 actaaagaacatctaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggcttgtggaga 324699  T
Q  134 gaga----tggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||    |||||||||||||||||||| |||||  |  | || | || | |      ||||||||||||||||||||||||| ||||||||||||||||    
T  324698 gagatggatggagatagctctctaaactaaagaatcaatacagaagattgaggggggtgcggcggtgatggatggagaaggagaagagtggtcgcggctc 324599  T
Q  223 accggcggtggggtgg 238  Q
     ||||| |||| ||||    
T  324598 gccggcagtggtgtgg 324583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 17480981 - 17481109
Alignment:
Q  28 aaatcaactaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttg 127  Q
    |||||||  |||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  17480981 aaatcaatcaaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacattcaatttcacattaccttacaatttacaagaattaggatttg 17481080  T
Q  128 tggagagagatggagatagctctctaaac 156  Q
    ||||||||||||||||||||||| |||||    
T  17481081 tggagagagatggagatagctctttaaac 17481109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 34 - 233
Target Start/End: Complemental strand, 26355125 - 26354914
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa-tttcacattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26355125 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaagttacattcaaatttcacattaccttacaagttacaacaattagggtttgtggag 26355026  T
Q  133 a--ga--gatggagatagctctctaaactgaagaaggaggagagta-atcgcg------gcggcggtgatggatggagaaggaggagagtggtcgcggct 221  Q
    |  ||  ||||||||||||||||| ||||  ||||  |  | || | || | |      ||||||||||||||||||||||||||||||||||||||| |    
T  26355025 aaggatggatggagatagctctctgaactatagaatcaatacagaagatggaggaggatgcggcggtgatggatggagaaggaggagagtggtcgcggtt 26354926  T
Q  222 caccggcggtgg 233  Q
    | ||||||||||    
T  26354925 cgccggcggtgg 26354914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 48184352 - 48184225
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||||||||||||||||||||| |||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48184352 actaaagaacatgtaatcatcaaatcagaat------tgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 48184259  T
Q  134 gaga----tggagatagctctctaaactgaagaa 163  Q
    ||||    |||||||||||||||||||| |||||    
T  48184258 gagatggatggagatagctctctaaactaaagaa 48184225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 26014586 - 26014504
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaaca 116  Q
    |||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014586 actaaataacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaatttcacattaccttacaagttacaaca 26014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 16764520 - 16764621
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16764520 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 16764619  T
Q  127 gt 128  Q
    ||    
T  16764620 gt 16764621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 10801550 - 10801650
Alignment:
Q  28 aaatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtt 125  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10801550 aaatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtt 10801649  T
Q  126 t 126  Q
    |    
T  10801650 t 10801650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 6165049 - 6165133
Alignment:
Q  44 atgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgt 128  Q
    ||||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6165049 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggtttgt 6165133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 6165191 - 6165245
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  6165191 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 6165245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 16764681 - 16764733
Alignment:
Q  186 ggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  16764681 ggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 16764733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 10801711 - 10801765
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  10801711 gcggtgatggatggagaaggaggagagtggtcgcggctcacaagcggtggtgtgg 10801765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 26014487 - 26014446
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctc 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  26014487 gcggcggtgatggatggagaaggagaagagtggtcgcggctc 26014446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 48184200 - 48184143
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||||||||| || |||||||||||||||  ||||| |||| ||||    
T  48184200 gcggcggtgatggatggagaagaagaagagtggtcgcggcttgccggcagtggtgtgg 48184143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 34 - 163
Target Start/End: Complemental strand, 32397352 - 32397218
Alignment:
Q  34 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattc-aatttcacattaccttacaagttacaacaattagggtttgtggag 132  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  32397352 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaatttcacattaccttataagttacaacaattagggtttgtggag 32397253  T
Q  133 a--ga--gatggagatagctctctaaactgaagaa 163  Q
    |  ||  |||||||||||||||||||||| |||||    
T  32397252 aaggatggatggagatagctctctaaactaaagaa 32397218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 62 - 163
Target Start/End: Complemental strand, 9303095 - 9302995
Alignment:
Q  62 aatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaactgaag 161  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||| |||||| ||||| ||    
T  9303095 aatcaaaattgaaggaaattacattcaatttcacattacctttcaagtt-taacaattagggtttgtggagagagatggagataactctctgaactggag 9302997  T
Q  162 aa 163  Q
    ||    
T  9302996 aa 9302995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 7171142 - 7171047
Alignment:
Q  38 aagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    |||||||||||||||||| |  ||||||||| |||||||||| || ||||||||||  |||||||| ||| |||||| ||||||||||||||||||    
T  7171142 aagaacatgtaatcatcagagaataatcatatttgaaggaaaatagattcaatttcttattaccttgcaatttacaagaattagggtttgtggaga 7171047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 14654645 - 14654704
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggagagagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  14654645 ttaccttacaatttacaagaactagggtttgtggagagagatggagatagctctttaaac 14654704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 32397193 - 32397136
Alignment:
Q  181 gcggcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    ||||||||||||||||||| |||||||||||||||| || || |||||||||| ||||    
T  32397193 gcggcggtgatggatggagcaggaggagagtggtcggggatcgccggcggtggtgtgg 32397136  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 156
Target Start/End: Complemental strand, 32397808 - 32397747
Alignment:
Q  97 ttaccttacaagttacaacaattagggtttgtggaga--gagatggagatagctctctaaac 156  Q
    ||||||||||| |||||| || |||||||||||||||  ||||||||||||||||| |||||    
T  32397808 ttaccttacaatttacaagaactagggtttgtggagagagagatggagatagctctttaaac 32397747  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 216
Target Start/End: Complemental strand, 9302967 - 9302935
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcg 216  Q
    |||||||||||||||||||||||||||||||||    
T  9302967 gcggtgatggatggagaaggaggagagtggtcg 9302935  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 238
Target Start/End: Original strand, 16497344 - 16497392
Alignment:
Q  190 atggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||| |||||||||||||||| ||||| |||| ||||    
T  16497344 atggatggagaaggagaagagtggtcgcggctcgccggcagtggtgtgg 16497392  T

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Target: scaffold1084 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 1324 - 1208
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataatt----gaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtgga 131  Q
    |||| ||||||||||||||| |||| ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |     
T  1324 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaatttcacattaccttacaaattacaacaattagtgtttgttgt 1225  T
Q  132 gagagatggagatagct 148  Q
    |||||||| ||||||||    
T  1224 gagagatgaagatagct 1208  T

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Target: scaffold0285 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 8366 - 8467
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8366 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 8465  T
Q  127 gt 128  Q
    ||    
T  8466 gt 8467  T

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Target: scaffold0285; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 8528 - 8579
Alignment:
Q  187 gtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  8528 gtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 8579  T

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Target: scaffold0054 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 29 - 128
Target Start/End: Complemental strand, 2989 - 2888
Alignment:
Q  29 aatcaactaaagaacat--gtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggttt 126  Q
    ||||||||||| |||||  ||||||||||||||| ||||| ||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2989 aatcaactaaaaaacatatgtaatcatcaaatcagaatcagaattgaagacaattacattcaatttcacattaacttacaagttacaacaattagggttt 2890  T
Q  127 gt 128  Q
    ||    
T  2889 gt 2888  T

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Target: scaffold0054; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 238
Target Start/End: Complemental strand, 2830 - 2776
Alignment:
Q  184 gcggtgatggatggagaaggaggagagtggtcgcggctcaccggcggtggggtgg 238  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  2830 gcggtgatggatggagaaggaggagagtggtcgcggctcaccagcggtggtgtgg 2776  T

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Target: scaffold1300 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 924 - 1067
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattga----aggaaattacattcaatttcacattaccttacaagttacaacaattagggt---ttgt 128  Q
    |||||||||| ||||||||| |||| |||||||||| |    |||||||||||||||||||||||||||||||||| ||||||||||||||||   ||||    
T  924 taaagaacatataatcatcatatcagaatcataattaattaaaggaaattacattcaatttcacattaccttacaaattacaacaattagggtttgttgt 1023  T
Q  129 ggagagagatggagatagct--ctctaaactgaagaaggaggag 170  Q
    ||||||||||| ||||||||   ||||||| ||||| |||||||    
T  1024 ggagagagatgaagatagctgaatctaaacagaagatggaggag 1067  T

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Target: scaffold0005 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 39728 - 39631
Alignment:
Q  36 taaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaatttcacattaccttacaagttacaacaattagggtttgtggaga 133  Q
    ||||||||| |||||||||| |  ||||||||| |||||||||| |||||| ||||||| ||||||||  || |||||| ||||||||||||||||||    
T  39728 taaagaacacgtaatcatcagagaataatcatatttgaaggaaaatacatttaatttcatattaccttgaaatttacaaaaattagggtttgtggaga 39631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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