View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_36 (Length: 256)
Name: NF1402_low_36
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34763207 - 34763428
Alignment:
| Q |
1 |
agaaaagaaactcaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763207 |
agaaaagaaactcaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaa |
34763306 |
T |
|
| Q |
101 |
acaacattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttat |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34763307 |
acaacattctgctcgccttctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttat |
34763406 |
T |
|
| Q |
201 |
tgaaaatctcctcagttctctt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34763407 |
tgaaaatctcctcagttctctt |
34763428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 34780901 - 34780684
Alignment:
| Q |
5 |
aagaaactcaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaa |
104 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780901 |
aagaaacttaccacaacaagacccttgatttgttcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaa |
34780802 |
T |
|
| Q |
105 |
cattctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaa |
204 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780801 |
cattctgctcgccatctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaa |
34780702 |
T |
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| Q |
205 |
aatctcctcagttctctt |
222 |
Q |
| |
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|||||||||||||||||| |
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| T |
34780701 |
aatctcctcagttctctt |
34780684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 222
Target Start/End: Original strand, 34755238 - 34755452
Alignment:
| Q |
8 |
aaactcaccacaacaagacccttgatttgctcctttgtaattttgatctccatggtctcatcttgtgcaaattcaagcaaagtgtcaagaaaaacaacat |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||| ||||||||||||| ||||||||||| ||| |
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| T |
34755238 |
aaacttaccacaacaagacccttgatttgttccttggtaattttgatgtccatggtctcatcctgagcatattcaagcaaagtatcaagaaaaactacac |
34755337 |
T |
|
| Q |
108 |
tctgctcgccctctacgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaat |
207 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34755338 |
tctgctcgccctctatgatttctccattttttcttttgttcacaatctcttgtcgtttcttgataaccttttcaatgataggatcatacttattgaaaat |
34755437 |
T |
|
| Q |
208 |
ctcctcagttctctt |
222 |
Q |
| |
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||| ||| ||||||| |
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|
| T |
34755438 |
ctcgtcaattctctt |
34755452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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