View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_42 (Length: 251)
Name: NF1402_low_42
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 35 - 247
Target Start/End: Complemental strand, 25478323 - 25478111
Alignment:
| Q |
35 |
ttccaccaaggcagcaagcaagactagttaaatttttccaaaacatataaatcttacactttttcagccacagggagtgttgcaatcaagattaattcag |
134 |
Q |
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| T |
25478323 |
ttccaccaaggcaacaagcaagactagttaaatttttccaaaacatataaatcttacactttttcagccacagggagtgttgcaatcaagattaaatcag |
25478224 |
T |
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| Q |
135 |
tctctattgcatgagtcactgcatacaaccatgtgaggaatacaatacgatttcagctagtattgaaaattcaattgctgaaaatcatccccagtaaaaa |
234 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
25478223 |
tctctattgcatgagtcactgcatgtaaccatgtgaggaatacaatacgatttcagctggtattgaaaattcaattgttgaaaatcatccccagtaaaaa |
25478124 |
T |
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| Q |
235 |
taatcattataca |
247 |
Q |
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|||||| |||||| |
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| T |
25478123 |
taatcagtataca |
25478111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 32655310 - 32655339
Alignment:
| Q |
204 |
ttcaattgctgaaaatcatccccagtaaaa |
233 |
Q |
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| T |
32655310 |
ttcaattgctgaaaatcatccccagtaaaa |
32655339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Complemental strand, 16757718 - 16757675
Alignment:
| Q |
205 |
tcaattgctgaaaatcatccccagtaaaaataatcattatacag |
248 |
Q |
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| T |
16757718 |
tcaattgctgaaaatcatgcccagtaaaaacaatcattatacag |
16757675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 17584266 - 17584234
Alignment:
| Q |
204 |
ttcaattgctgaaaatcatccccagtaaaaata |
236 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
17584266 |
ttcaattgctgaaaatcatccccagtaaaaata |
17584234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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