View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_47 (Length: 229)
Name: NF1402_low_47
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_47 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 43465091 - 43465313
Alignment:
| Q |
7 |
ataatgacccttttgaatgatcttatcaaaaagctcaccaccagcacacaactccatcaccaaatgcacaaacacagaatcctcataggttccttgaatt |
106 |
Q |
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| T |
43465091 |
ataatgacccttttgaatgatcttatcaaaaagctcaccaccagcacacaactccatcaccaaatgcacaaacacagaatcctcataggttccttgaatt |
43465190 |
T |
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| Q |
107 |
tgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43465191 |
tgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattg |
43465290 |
T |
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| Q |
207 |
atttgcatgcatagagtttccct |
229 |
Q |
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||||||||||||||||||||||| |
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| T |
43465291 |
atttgcatgcatagagtttccct |
43465313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 23287571 - 23287640
Alignment:
| Q |
113 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttac |
182 |
Q |
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| T |
23287571 |
acatttggatgttcagataaatggtgcattatttgaatctctctccaaacatcatcataatcctctttac |
23287640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 23255843 - 23255782
Alignment:
| Q |
116 |
tttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc |
177 |
Q |
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| T |
23255843 |
tttggatgttcagataaatggtgcattatctaaatctctctccagacatcatcataatcctc |
23255782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 23286995 - 23286931
Alignment:
| Q |
113 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc |
177 |
Q |
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| T |
23286995 |
acatttggatgttcagataaatggtgcattatctaaatctctgtccaaacatcatcataatcctc |
23286931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 23256572 - 23256636
Alignment:
| Q |
113 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctc |
177 |
Q |
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| T |
23256572 |
acatttggatgttcagataaatggtgcattttttgaatctctctctaaacatcatcataatcctc |
23256636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 8404895 - 8404854
Alignment:
| Q |
35 |
aaaagctcaccaccagcacacaactccatcaccaaatgcaca |
76 |
Q |
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| T |
8404895 |
aaaagctcaccacctaaacacaactccatcaccaaatgcaca |
8404854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 44766812 - 44766712
Alignment:
| Q |
113 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattgatttgc |
212 |
Q |
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|||||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||| |||| | ||||||||||| |
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| T |
44766812 |
acatttggatgttcggataaatggtgcattatttgaatctctctccaagcatcatcataatcctctttacacaaaagcttcttctttgagattgatttgc |
44766713 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
44766712 |
a |
44766712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 44756719 - 44756619
Alignment:
| Q |
113 |
acatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctccttacacaaaagcttcctcttagggattgatttgc |
212 |
Q |
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|||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||||||| |||| | ||||||||||| |
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| T |
44756719 |
acatttggattttcagacaaatggtgcattatctgaatctctctccaaacatcatcataatcctctttgcataaaagcttcttctttgagattgatttgc |
44756620 |
T |
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| Q |
213 |
a |
213 |
Q |
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| T |
44756619 |
a |
44756619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 39940180 - 39940049
Alignment:
| Q |
82 |
agaatcctcataggttccttgaatttgaaccacatttggatgttcagataaatggtgcatgatctgaatctctctccacacatcatcataatcctcctta |
181 |
Q |
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|||||||||||| ||||||| ||| ||| || | ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||| || || |
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| T |
39940180 |
agaatcctcatacgttccttctattctaacaacgtgaggatgttcagataaatgatgcattatctgaatctctctccaaacatcttcataatcttctttg |
39940081 |
T |
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| Q |
182 |
cacaaaagcttcctcttagggattgatttgca |
213 |
Q |
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|| |||||||| ||||| |||||||||||||| |
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| T |
39940080 |
cagaaaagctttctctttgggattgatttgca |
39940049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 38810334 - 38810371
Alignment:
| Q |
35 |
aaaagctcaccaccagcacacaactccatcaccaaatg |
72 |
Q |
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||||| ||||||||||||||||||||||| |||||||| |
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| T |
38810334 |
aaaagttcaccaccagcacacaactccataaccaaatg |
38810371 |
T |
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