View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1402_low_50 (Length: 207)

Name: NF1402_low_50
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1402_low_50
NF1402_low_50
[»] chr4 (6 HSPs)
chr4 (1-131)||(11779029-11779159)
chr4 (7-131)||(11696056-11696180)
chr4 (7-131)||(11797897-11798021)
chr4 (4-131)||(11675957-11676084)
chr4 (4-131)||(11684236-11684363)
chr4 (7-131)||(11701853-11701977)
[»] scaffold0294 (1 HSPs)
scaffold0294 (1-131)||(16492-16622)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 11779029 - 11779159
Alignment:
Q  1 ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc 100  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11779029 ggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc 11779128  T
Q  101 tctttggtgctttcattgctgattcttttct 131  Q
    |||||||||| ||||||||||||||||||||    
T  11779129 tctttggtgcattcattgctgattcttttct 11779159  T

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Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11696056 - 11696180
Alignment:
Q  7 ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||| |||||||||||||||||||||| |||||||||||||    
T  11696056 ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttg 11696155  T
Q  107 gtgctttcattgctgattcttttct 131  Q
    |||||||||||||||||||||||||    
T  11696156 gtgctttcattgctgattcttttct 11696180  T

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Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11797897 - 11798021
Alignment:
Q  7 ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg 106  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||    
T  11797897 ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttg 11797996  T
Q  107 gtgctttcattgctgattcttttct 131  Q
    |||||||||||||||||||||||||    
T  11797997 gtgctttcattgctgattcttttct 11798021  T

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Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 11675957 - 11676084
Alignment:
Q  4 aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  11675957 aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct 11676056  T
Q  104 ttggtgctttcattgctgattcttttct 131  Q
    ||||||||||  ||||||||||||||||    
T  11676057 ttggtgcttttgttgctgattcttttct 11676084  T

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Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 131
Target Start/End: Original strand, 11684236 - 11684363
Alignment:
Q  4 aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct 103  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||||||  ||||||||||||||||||||    
T  11684236 aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct 11684335  T
Q  104 ttggtgctttcattgctgattcttttct 131  Q
    ||||||||||  ||||||||||||||||    
T  11684336 ttggtgcttttgttgctgattcttttct 11684363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 11701853 - 11701977
Alignment:
Q  7 ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg 106  Q
    |||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| |    
T  11701853 ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttag 11701952  T
Q  107 gtgctttcattgctgattcttttct 131  Q
    |||||||  ||||||||||||||||    
T  11701953 gtgcttttgttgctgattcttttct 11701977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 16492 - 16622
Alignment:
Q  1 ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16492 ggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctc 16591  T
Q  101 tctttggtgctttcattgctgattcttttct 131  Q
    |||| ||||||||| ||||||||||||||||    
T  16592 tcttaggtgctttcgttgctgattcttttct 16622  T

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