View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1402_low_51 (Length: 207)
Name: NF1402_low_51
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_51 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 11779029 - 11779153
Alignment:
| Q |
1 |
ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779029 |
ggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc |
11779128 |
T |
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| Q |
101 |
tctttggtgctttcattgctgattc |
125 |
Q |
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|||||||||| |||||||||||||| |
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| T |
11779129 |
tctttggtgcattcattgctgattc |
11779153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 11696056 - 11696174
Alignment:
| Q |
7 |
ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
11696056 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttg |
11696155 |
T |
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| Q |
107 |
gtgctttcattgctgattc |
125 |
Q |
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| T |
11696156 |
gtgctttcattgctgattc |
11696174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 11797897 - 11798015
Alignment:
| Q |
7 |
ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg |
106 |
Q |
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| T |
11797897 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttg |
11797996 |
T |
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| Q |
107 |
gtgctttcattgctgattc |
125 |
Q |
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| T |
11797997 |
gtgctttcattgctgattc |
11798015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 11675957 - 11676078
Alignment:
| Q |
4 |
aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
11675957 |
aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct |
11676056 |
T |
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| Q |
104 |
ttggtgctttcattgctgattc |
125 |
Q |
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| T |
11676057 |
ttggtgcttttgttgctgattc |
11676078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 125
Target Start/End: Original strand, 11684236 - 11684357
Alignment:
| Q |
4 |
aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
11684236 |
aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct |
11684335 |
T |
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| Q |
104 |
ttggtgctttcattgctgattc |
125 |
Q |
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| T |
11684336 |
ttggtgcttttgttgctgattc |
11684357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 7 - 125
Target Start/End: Original strand, 11701853 - 11701971
Alignment:
| Q |
7 |
ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctttg |
106 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | |
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| T |
11701853 |
ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctcttag |
11701952 |
T |
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| Q |
107 |
gtgctttcattgctgattc |
125 |
Q |
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||||||| |||||||||| |
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| T |
11701953 |
gtgcttttgttgctgattc |
11701971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 16492 - 16616
Alignment:
| Q |
1 |
ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
16492 |
ggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctc |
16591 |
T |
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| Q |
101 |
tctttggtgctttcattgctgattc |
125 |
Q |
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|||| ||||||||| |||||||||| |
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| T |
16592 |
tcttaggtgctttcgttgctgattc |
16616 |
T |
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