View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1402_low_6 (Length: 573)
Name: NF1402_low_6
Description: NF1402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1402_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 140 - 549
Target Start/End: Complemental strand, 31201987 - 31201578
Alignment:
| Q |
140 |
acaacaataagaagaggaataatgagattcaagatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaata |
239 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201987 |
acaacaataagaagaggaataatgagattcaagatgacatataccatcacttgttaattgtcgctaaaagttatagtataataatgaatcaacagcaata |
31201888 |
T |
|
| Q |
240 |
ataacaataaatttgtcnnnnnnntaataatcagaatattaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatct |
339 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31201887 |
ataacaataaatttgtcaaaaaaataataatcagaatattaagaatgataccctgattgtttggttaccaatggttatggtactgctgaagtctctatct |
31201788 |
T |
|
| Q |
340 |
aatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttc |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201787 |
aatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccaccggttggtccttcattacctgcagaggcaactaataatatatttc |
31201688 |
T |
|
| Q |
440 |
tagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaac |
539 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201687 |
tagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttcgggataaacaagagaatggccagcaagtgaaagtgagattatatcaac |
31201588 |
T |
|
| Q |
540 |
accatcacta |
549 |
Q |
| |
|
|||||||||| |
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|
| T |
31201587 |
accatcacta |
31201578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 214 - 491
Target Start/End: Original strand, 31063256 - 31063532
Alignment:
| Q |
214 |
agtataataatgaatcaacagcaataata--acaataaatttgtcnnnnnnntaataatcagaatattaagaatgataccctgattgttttgttaccaat |
311 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| |||| || |||||||||||||||||| ||||| ||| ||| || |||||| |
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|
| T |
31063256 |
agtataataataaattaacagcaataatatcacaataaatatgtcaaaaagaaaaaaatcagaatattaagaat---accctaattatttggtcaccaat |
31063352 |
T |
|
| Q |
312 |
ggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctacattcacaacacttccattggttggtccttcatta |
411 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||| |||||||||||| ||||| ||||| |||||||||||| ||| ||||||||||| |
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| T |
31063353 |
ggttatggtactgctgaagtctctgtcaattgtactagcagcaactgtgaatacccaaggagcaacattaacaacacttccaggggtaggtccttcattt |
31063452 |
T |
|
| Q |
412 |
cctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatatcttc |
491 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| ||||||||| ||||| || |||||||||||||| |||||||| ||||| |
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|
| T |
31063453 |
cccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaacctcgtcggtaaaaatttcttc |
31063532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 277 - 491
Target Start/End: Original strand, 31108405 - 31108619
Alignment:
| Q |
277 |
attaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagcta |
376 |
Q |
| |
|
|||||| || ||||| ||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| | |
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|
| T |
31108405 |
attaaggataataccgtgagtgttttgttaccaatggtcatgacactgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaa |
31108504 |
T |
|
| Q |
377 |
cattcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtc |
476 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||| || ||||| |||||||||||||||||||||| ||||||||| ||||| || ||||||| |||||| |
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|
| T |
31108505 |
cattaacaacacttccaggggtaggtccttcatttcccgcagatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcgtc |
31108604 |
T |
|
| Q |
477 |
tgtaaaaatatcttc |
491 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
31108605 |
agtaaaaatttcttc |
31108619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 18661898 - 18661808
Alignment:
| Q |
7 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
18661898 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcgccatat |
18661808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 278 - 496
Target Start/End: Original strand, 31146156 - 31146374
Alignment:
| Q |
278 |
ttaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctac |
377 |
Q |
| |
|
||||| |||||||| ||| |||||||||| ||| || ||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
31146156 |
ttaaggatgataccgtgagtgttttgttattaatagtcatgacactgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaac |
31146255 |
T |
|
| Q |
378 |
attcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtct |
477 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| || || || |||||||||||||||||||||| ||||||||| ||||| || ||||||| ||| || |
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|
| T |
31146256 |
attagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcatca |
31146355 |
T |
|
| Q |
478 |
gtaaaaatatcttcgggat |
496 |
Q |
| |
|
||||||||| |||| |||| |
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|
| T |
31146356 |
gtaaaaataacttcaggat |
31146374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 278 - 496
Target Start/End: Original strand, 31163982 - 31164200
Alignment:
| Q |
278 |
ttaagaatgataccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctac |
377 |
Q |
| |
|
||||| |||||||| ||| |||| ||||| |||||| ||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| || |
|
|
| T |
31163982 |
ttaaggatgataccgtgagtgttctgttattaatggtcatgacactgctgaagtctctgtctaatgtactagcagcaacagtgaacacccatggagcaac |
31164081 |
T |
|
| Q |
378 |
attcacaacacttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtct |
477 |
Q |
| |
|
||| |||||||||| ||| ||||||||||| || || || |||||||||||||||||||||| ||||||||| ||||| || ||||||| ||| || |
|
|
| T |
31164082 |
attagtaacacttccaggggtaggtccttcatttccagccgatgcaactaataatatatttctagcaagtgcatgaaatgcacctattgaaatctcatca |
31164181 |
T |
|
| Q |
478 |
gtaaaaatatcttcgggat |
496 |
Q |
| |
|
||||||||| |||| |||| |
|
|
| T |
31164182 |
gtaaaaataacttcaggat |
31164200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 31050864 - 31051067
Alignment:
| Q |
288 |
taccctgattgttttgttaccaatggttatggtactgctgaagtctctatctaatgtactagcagcaattgtgaatacccatggagctacattcacaaca |
387 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||| ||||| ||||| ||||| |||| |
|
|
| T |
31050864 |
taccgtgactgttttgttaccaatggttatagtactgctgaagtctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaaca |
31050963 |
T |
|
| Q |
388 |
cttccattggttggtccttcattacctgcagaggcaactaataatatatttctagaaagtgcatggaatgctccaattgaaacctcgtctgtaaaaatat |
487 |
Q |
| |
|
|||||| ||||||||| |||| || ||||| |||||||||||||| ||| ||| | ||| || ||||| || ||||||| || || |||||||| | |
|
|
| T |
31050964 |
cttccaggggttggtccaccatttccagcagatgcaactaataatatgtttttagcgaatgcctgaaatgcacctattgaaatttcatcggtaaaaattt |
31051063 |
T |
|
| Q |
488 |
cttc |
491 |
Q |
| |
|
|||| |
|
|
| T |
31051064 |
cttc |
31051067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 21120080 - 21119990
Alignment:
| Q |
7 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattggcgacaacgcattttcattcaccatat |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||||||||| || ||||||||||| || || || ||||| ||| |||||| |
|
|
| T |
21120080 |
aaacatacagaagatgtaattgtctcttcaaatggcactttctctgctggtttttatcaaattggtgaaaatgctttttccttcgccatat |
21119990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 21132789 - 21132731
Alignment:
| Q |
7 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatca |
65 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||| |
|
|
| T |
21132789 |
aaacatgcagaagatgtaattgtttcttcaaagggaactttctctgctggattctatca |
21132731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 21127464 - 21127400
Alignment:
| Q |
7 |
aaacatacagaagatgtaattgtctcttcaaagggtacattctctgctggcttctatcaaattgg |
71 |
Q |
| |
|
|||||| |||||||||||| ||| ||||||||||| || ||||||||||| ||||||||| |||| |
|
|
| T |
21127464 |
aaacatgcagaagatgtaactgtttcttcaaagggaactttctctgctggattctatcaagttgg |
21127400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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